PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro06_G03876

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 273aa MW: 31704.6 Da PI: 9.4155

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro06_G03876	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	104	127	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k+F s L +H + H Ro06_G03876 104 WQCGYCKKRFYEESFLDKHFDNrH 127 58*****************77666 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
MKWVSLLCLY LSVSLQFSIV SPQSLQADQG YEEFATTRGE ASDAPEVHCS RKRSKAAWKI 60 IEEYLIPYLE KERYPIPRTC RLHPDNDLYR DQEQHKIRID IYEWQCGYCK KRFYEESFLD 120 KHFDNRHYNL LNVSHSRCLA DVCGALHCDL AMGAVPHKTK CNPAAAARNK HLCEGLADSC 180 FPVNQGPSAS RLHEFFLRQF CDALTCTGGR KPFSQGRRKK RMSISYIVIS VLTLMLLLLY 240 YTYLYIYRRG IKRGTQELKR VSLTQSGRKK KPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-108	C2H2 family protein