PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G63280.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 271aa    MW: 31282 Da    PI: 8.7886
Description C2H2-like zinc finger protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G63280.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.1e-05105128123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  +kC++C+ksF++   L +H +t H
  AT5G63280.1 105 WKCGYCKKSFNDEKFLDKHFSTrH 128
                  58*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.621105128IPR007087Zinc finger, C2H2
PROSITE patternPS000280107128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRLWESLPV ILLLLVLLLH QSVSQGFEES ESTRLVNEEV EVSNAPEIHC SRERSRAAWQ  60
IIQDYLTPFV ERERYEIPKN CRLHPDNDLY RDQEHHKVHV DVFEWKCGYC KKSFNDEKFL  120
DKHFSTRHYN LLNTTDTKCL ADLCGALHCD FVLSSKKPKS KCNPPAVAKN RHLCESVANS  180
CFPVSQGPSA SRLHEHFLRQ FCDAHTCTGN DKPFPRGGKK KSGVFYLAIS ILTLMLLPLF  240
YLLVFLHQRE KRSGTQDLRR IIKSGKKTKP S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.88460.0flower| root| silique
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1453595950.0
Genevisible247372_at1e-170
Expression AtlasAT5G63280-
AtGenExpressAT5G63280-
ATTED-IIAT5G63280-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G63280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G63280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639590.0AY063959.1 Arabidopsis thaliana unknown protein (At5g63280) mRNA, complete cds.
GenBankAY1338530.0AY133853.1 Arabidopsis thaliana clone U11672 unknown protein (At5g63280) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568969.10.0C2H2-like zinc finger protein
TrEMBLA0A178U7770.0A0A178U777_ARATH; Uncharacterized protein
TrEMBLQ8VZP20.0Q8VZP2_ARATH; C2H2-like zinc finger protein
STRINGAT5G63280.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Representative plantOGRP484655