PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G31741
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB_related
Protein Properties Length: 375aa    MW: 41089.3 Da    PI: 4.6603
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G31741genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWTteEd+ l+++++  G g+W++ ++  g+ R++k+c++rw +yl
      Ro05_G31741 14 KGRWTTEEDQTLINYIHANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MGRAPCCEKV GLKKGRWTTE EDQTLINYIH ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNI TPQEEDIIIK LHASLGNSCT AAEGQMNMVM ELGPPTSKRR GRGGRTSRWA  120
MKKNKIPTTG SATVTTSSSC PPPPAAAAAA VIGQKETQTL GGGGGGPSDQ EFDDGGVVAF  180
NDLMLDAVNE ILDPTGVLTL SGKRQSDDED VMMGVVRDED SGKLFCGPNT QEEEQLDQIS  240
PTNLSSSSNS NSISNSNSKS SYGEAAGAFD GEDWYNSCSN YSLAAATCNF DDEQKHCDGG  300
NGTLDAELRW DWESDIQRHD YIWNIDEQKD DENMLSWLWE HHDHTNNKFR SEAVVVDDQV  360
PAHEKHNAML AWLLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-48MYB family protein