PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G30585

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 548aa MW: 61381.4 Da PI: 7.6131

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G30585	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.9	1.5e-12	312	357	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr+++P+ K++Ka+ L Av YI++L Ro05_G30585 312 NHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLSDAVVYINKL 357 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MEEINIVSFC STTPYNICQD TSAATLQQRL QFILQNRPEF WVYSIFWQAS KDRNNGVSLS 60 WAGGHFRGTR DLSSKRSSIH KLDNNYQPKF GLDLERPKKV VNREVEALFH NFHEDMDMDR 120 LVDINGDVTD SEWFYFYTVS LTQSFAAGHG NNSNNILGRA FCSGTFVWLA GEELQFNECE 180 RVKEARMHGI QTFVCIATPY GVLELASVEV IKEDWGFVHL SKSIFGSDII PNSGCGVSTA 240 KQDQVHVPQL QTGMFSGSAQ KEWTTQGGGK ETLNLTGSSS DSGPSENTSN TRLKKRGRSD 300 NHVSGGRDSP INHVEAERQR REKLNHRFYA LRSVVPNVSK MDKASLLSDA VVYINKLKTK 360 IEELEAKIQA QPKKPKASIM SDSILDYSQS TSSITYRTAA ATEVDVKIVG SEAMIRVRCP 420 DKGDYPYARL MNALKDLELQ IHHASISTKV GSTSSIISHK AAAAMQVDVK FVGSDAMIRV 480 QCRDNDDYPY ARLMNALKDL ELQIYHASIL SVKEVMLQDI VARVPVGYTS EEAMRTAIVK 540 RLNYQLIN

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MEEINIVSFC STTPYNICQD TSAATLQQRL QFILQNRPEF WVYSIFWQAS KDRNNGVSLS  60
WAGGHFRGTR DLSSKRSSIH KLDNNYQPKF GLDLERPKKV VNREVEALFH NFHEDMDMDR  120
LVDINGDVTD SEWFYFYTVS LTQSFAAGHG NNSNNILGRA FCSGTFVWLA GEELQFNECE  180
RVKEARMHGI QTFVCIATPY GVLELASVEV IKEDWGFVHL SKSIFGSDII PNSGCGVSTA  240
KQDQVHVPQL QTGMFSGSAQ KEWTTQGGGK ETLNLTGSSS DSGPSENTSN TRLKKRGRSD  300
NHVSGGRDSP INHVEAERQR REKLNHRFYA LRSVVPNVSK MDKASLLSDA VVYINKLKTK  360
IEELEAKIQA QPKKPKASIM SDSILDYSQS TSSITYRTAA ATEVDVKIVG SEAMIRVRCP  420
DKGDYPYARL MNALKDLELQ IHHASISTKV GSTSSIISHK AAAAMQVDVK FVGSDAMIRV  480
QCRDNDDYPY ARLMNALKDL ELQIYHASIL SVKEVMLQDI VARVPVGYTS EEAMRTAIVK  540
RLNYQLIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	299	LKKRGRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	3e-52	bHLH family protein