PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G27917

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

ERF

Protein Properties

Length: 743aa MW: 82279.1 Da PI: 9.855

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G27917	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.8	1.1e-17	477	526	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grW+AeIr+p + +r +lg+f+taeeAa +++a++ l+g Ro05_G27917 477 KFLGVRQRP-WGRWAAEIREP-----HsgRRLWLGTFDTAEEAAMVYDKAALLLRG 526 688****.******7.....337*********************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MEIKFTSDNM GQEVTKKLKG MNGHAVAVGY GSPNGDAGHV VLGSSKRCSF QAQEKLSSPF 60 VNLGEDVTNR LKFKLKRLAM RSVGCESPKG DPRQLVLEAS KRCSFLQPWE KHAKTLDSTG 120 QDGLAVPVGL DSPKDDAKHL VLEASKRYLE LKCNFLQAQE KHAKTLDNTS QDGCAVPVGL 180 DSPKGDARHL VLEASKSFLQ AQEKHAKTLD NTSQDGCAVP VGLDCPKGDA GHLVLEASKS 240 FLQAQEKLSK PLGNMGQDVT KKSKGLDGLA VSFGYDGPKD DARHLVLEAS KSFIQAHEKL 300 SKRLDNIGQD LTKKLKFKLK LQNGLHGRAV PVGDDGLKGD SGNLVLEASK SLEQSIGGLI 360 DGGGNTEVDQ HTQTEAKSIK PRLVRISVTD GDATESSSDE EAEPLATRHR VKKFVNEIMI 420 DSSSTKTDSG VWRSRTTRMW RKKTAGKSGL PATCRTLKAQ TTWKKFRGVK AQATKNKFLG 480 VRQRPWGRWA AEIREPHSGR RLWLGTFDTA EEAAMVYDKA ALLLRGPDTF TNFTTPQMDI 540 AFSTHEKNSS LSLRILEVGV IKGGVQIDLF ESQYGYRSMM VKWSRLGAFT KMKSFFIHAV 600 DYWGAECLRH ASGDMYTIPT SVDNPMMTIF LTVAVTCMSH LRSNVMCNGL IELASEVLLQ 660 IKKWKAIHLP RCCWCRPFLR DDSKQYTRKG QRINEEIKRN TIDGRERAKA MFWSVTSHDL 720 VVVVPEGPIR GTHNYARHIH ETF

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MEIKFTSDNM GQEVTKKLKG MNGHAVAVGY GSPNGDAGHV VLGSSKRCSF QAQEKLSSPF  60
VNLGEDVTNR LKFKLKRLAM RSVGCESPKG DPRQLVLEAS KRCSFLQPWE KHAKTLDSTG  120
QDGLAVPVGL DSPKDDAKHL VLEASKRYLE LKCNFLQAQE KHAKTLDNTS QDGCAVPVGL  180
DSPKGDARHL VLEASKSFLQ AQEKHAKTLD NTSQDGCAVP VGLDCPKGDA GHLVLEASKS  240
FLQAQEKLSK PLGNMGQDVT KKSKGLDGLA VSFGYDGPKD DARHLVLEAS KSFIQAHEKL  300
SKRLDNIGQD LTKKLKFKLK LQNGLHGRAV PVGDDGLKGD SGNLVLEASK SLEQSIGGLI  360
DGGGNTEVDQ HTQTEAKSIK PRLVRISVTD GDATESSSDE EAEPLATRHR VKKFVNEIMI  420
DSSSTKTDSG VWRSRTTRMW RKKTAGKSGL PATCRTLKAQ TTWKKFRGVK AQATKNKFLG  480
VRQRPWGRWA AEIREPHSGR RLWLGTFDTA EEAAMVYDKA ALLLRGPDTF TNFTTPQMDI  540
AFSTHEKNSS LSLRILEVGV IKGGVQIDLF ESQYGYRSMM VKWSRLGAFT KMKSFFIHAV  600
DYWGAECLRH ASGDMYTIPT SVDNPMMTIF LTVAVTCMSH LRSNVMCNGL IELASEVLLQ  660
IKKWKAIHLP RCCWCRPFLR DDSKQYTRKG QRINEEIKRN TIDGRERAKA MFWSVTSHDL  720
VVVVPEGPIR GTHNYARHIH ETF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53290.1	4e-30	ERF family protein