PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G27149

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 377aa MW: 43409.6 Da PI: 6.7886

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G27149	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	114	136	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H Ro05_G27149 114 CSyeGCGKTFIDAGALRKHSHIH 136 77779**************7766 PP
2	zf-C2H2	22.1	3.9e-07	141	165	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk Fs nL++H++tH Ro05_G27149 141 YVCHyeGCGKAFSLDFNLRSHMKTH 165 9***********************9 PP
3	zf-C2H2	15.8	4e-05	171	195	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk++ + + Lk+Hi++H Ro05_G27149 171 HICPypECGKRYAHEYKLKNHISSH 195 679999******************6 PP
4	zf-C2H2	13.8	0.00017	235	260	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H Ro05_G27149 235 YACPyeGCEKAYIHEYKLKLHLRReH 260 89**********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MDTQFHHNFY ERRPIFRSKT PAVRWFKEWV PQDVVATGGK CSLLKWVTEK QNFANNKSMY 60 CMSLFFMTVM GLARFSHFSL FFLEGTVKAL NEKSKELVAP EPEPEPTTEV LFLCSYEGCG 120 KTFIDAGALR KHSHIHGERQ YVCHYEGCGK AFSLDFNLRS HMKTHSQENY HICPYPECGK 180 RYAHEYKLKN HISSHHEKNV PVDVPKYAIP SSEKQTKTLK PPAGVYGSAS SDRPYACPYE 240 GCEKAYIHEY KLKLHLRREH PGHMSDENAE NAPNNADNEM DEASDQDVYA GKRVNGKSQK 300 TNRAKPNLKF PPAKVVQRKG STPSPVTMKT MKKPWPVKEV VYEEDSEETE EDRDNVDDGW 360 RYAGNNDDDD EETEYED

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MDTQFHHNFY ERRPIFRSKT PAVRWFKEWV PQDVVATGGK CSLLKWVTEK QNFANNKSMY  60
CMSLFFMTVM GLARFSHFSL FFLEGTVKAL NEKSKELVAP EPEPEPTTEV LFLCSYEGCG  120
KTFIDAGALR KHSHIHGERQ YVCHYEGCGK AFSLDFNLRS HMKTHSQENY HICPYPECGK  180
RYAHEYKLKN HISSHHEKNV PVDVPKYAIP SSEKQTKTLK PPAGVYGSAS SDRPYACPYE  240
GCEKAYIHEY KLKLHLRREH PGHMSDENAE NAPNNADNEM DEASDQDVYA GKRVNGKSQK  300
TNRAKPNLKF PPAKVVQRKG STPSPVTMKT MKKPWPVKEV VYEEDSEETE EDRDNVDDGW  360
RYAGNNDDDD EETEYED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-115	C2H2 family protein