PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G24582

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 287aa MW: 32760.1 Da PI: 5.7141

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G24582	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.3e-19	56	108	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++++q+++Le Fe ++++ e++ +LA++lgL+ rqV +WFqNrRa++k Ro05_G24582 56 KRRLSSHQVKTLEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWK 108 5589************************************************9 PP
2	HD-ZIP_I/II	129.3	1.5e-41	55	146	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls++qvk+LE sFe e+kLeperKv+la+eLgl+prqva+WFqnrRAR+ktkqlE+dy++Lk+ ydalk++ ++Le+++++L+e+lke Ro05_G24582 55 KKRRLSSHQVKTLEISFEVENKLEPERKVKLAEELGLEPRQVAIWFQNRRARWKTKQLERDYSVLKADYDALKHNYDSLERQNKALAEKLKE 146 9****************************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MKRFSRSDSL GTLIPNYPPK EEEKHANNNG GYSKEFQAML DTYDQEDCGE EISVKKRRLS 60 SHQVKTLEIS FEVENKLEPE RKVKLAEELG LEPRQVAIWF QNRRARWKTK QLERDYSVLK 120 ADYDALKHNY DSLERQNKAL AEKLKELKAK LCRDSAESNQ SVKEESPISV YKSSVMEASR 180 DQDLSGNGDN AGLDLYKNLK SKDGSSDSDS NGAMKEESNG NESSLGYNGH SLSSNSMMNW 240 FQLSDSRSGN KGYHHQTQFA RIEEQSLFST EESCNFFSVD QAPSLHW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	55	84	KKRRLSSHQVKTLEISFEVENKLEPERKVK
2	103	111	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	4e-50	HD-ZIP family protein