PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G19152
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 660aa    MW: 74893.9 Da    PI: 5.7112
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G19152genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2691.6e-822926581374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfsevsPilkfs 94 
                  l +lLl++Ae v+ +++e+a++lL + + +a+ +g+p+qR++ yfteAL++r+ +  +++ ++ + +e+   +     s+++a+ k  ++  P++++ 
  Ro05_G19152 292 LAHLLLAAAEKVEYQQFERASRLLLQCEWIANIKGSPVQRVVYYFTEALRERIEK-ETGVGSTNKGNEEILAEhvqgLSTNIAYIK-CHQQVPFHRVM 387
                  579***************************************************9.555555444333332222233555555555.56667****** PP

         GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                  +++  qa+ e v++e+r+H iD++i  G+QW  L+++La+R+e p   l iT+vg      k++++etgerLa++A++l++pf+f+ ++++++ d++ 
  Ro05_G19152 388 QFVGIQAVIENVANESRIHLIDLEIRSGVQWTGLMETLAEREECPVeLLTITAVGV---RGKQKIKETGERLASVAKSLNLPFQFREVIVSDMGDIKD 482
                  ******************************************7666489******9...589**********************************98 PP

         GRAS 192 eeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                  + + +v+ +Ea++V  +l l ++l ++ +le+    +++++++l+P ++vv+e ea+hns+sF++rf++al yysa+fd+le  + ++++ r+ vE+ 
  Ro05_G19152 483 QLFnEVEDDEAVVVYAALVLRTMLPRPRCLEN----LMRVMRNLNPCLMVVIEVEANHNSPSFVNRFIDALFYYSAFFDCLEFCM-KQEKYRVIVEEL 575
                  88855666****************99999999....**********************************************996.667888888887 PP

         GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   + + i+n+va+eg+er+ r  ++  Wr+ + ++ + ++ +s++   qa+l+ ++++    +++   ++l+ gW++ p+ s+SaW+
  Ro05_G19152 576 -FCEGIRNIVAAEGSERVTRSVKMDVWRAFFARFRMVEMGFSNSSLYQASLVAKNFGC--TTLDRTGKCLTVGWMGTPIHSISAWK 658
                  .********************************************************4..59***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MENIICEMAD AFFSFTPFDF GIQGGLSPPQ LEDYDKEESV MFHVSKGDHL FGIEDQLGEM  60
NTLSSEHGFY QDNKAKKGVV LSHLSKDQNQ HHDLDHQQQS KLNFLILDNF NFETVSSQHG  120
FYHVNKAGKD QLHHHYQQQQ QQSKSSSSSL ENFSFDFSFP SAKVTQPIED GVRFTPSQIE  180
GSGIVETNKQ MPPPQSSLQT LELLNSYGSA FKKLKGEKLG SSNTVRRNEL DQSSSYVVSG  240
KQKLSTEEVM RVAGARYVQF SSQGCDDVYM PMHPFGYALS GLSEEETKDV ELAHLLLAAA  300
EKVEYQQFER ASRLLLQCEW IANIKGSPVQ RVVYYFTEAL RERIEKETGV GSTNKGNEEI  360
LAEHVQGLST NIAYIKCHQQ VPFHRVMQFV GIQAVIENVA NESRIHLIDL EIRSGVQWTG  420
LMETLAEREE CPVELLTITA VGVRGKQKIK ETGERLASVA KSLNLPFQFR EVIVSDMGDI  480
KDQLFNEVED DEAVVVYAAL VLRTMLPRPR CLENLMRVMR NLNPCLMVVI EVEANHNSPS  540
FVNRFIDALF YYSAFFDCLE FCMKQEKYRV IVEELFCEGI RNIVAAEGSE RVTRSVKMDV  600
WRAFFARFRM VEMGFSNSSL YQASLVAKNF GCTTLDRTGK CLTVGWMGTP IHSISAWKFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-43GRAS family protein