PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G19039

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GRF

Protein Properties

Length: 318aa MW: 35315.9 Da PI: 9.5768

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G19039	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	72.9	3.6e-23	71	115	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH++rgr rsrk +e+ Ro05_G19039 71 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMNRGRYRSRKLVES 115 79***************************************9986 PP
2	QLQ	46.3	1.3e-16	14	49	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT aQ++++++Q+l++KyL a++ vPp+Ll++i++ Ro05_G19039 14 LFTVAQWAEMEHQALVFKYLKAGLTVPPDLLAPIRN 49 6*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MSRSLVGGGG HAPLFTVAQW AEMEHQALVF KYLKAGLTVP PDLLAPIRNS FNLMYPDFLL 60 TYASFCGKKI DPEPGRCRRT DGKKWRCSKD AHPDSKYCER HMNRGRYRSR KLVESQTTPQ 120 SLSTVTSDIR TGSRSQSGSF QNMPVHSAVN SGGLCFGSDV PQLKMEPIPY GIVKRGNRVL 180 DGAEEHNFMS EASGSARSLG VDNTVDSPWR LMTSRVPLNS SSEARNGSLL LNNSSQLQPL 240 QDIEPGTVDA AMTKQQQRQY VGGEFGVLRS LKQEQHSLQP FFDEWPKSRD LGFHLNDPRS 300 TNNLPNTTQL SMKLVVVG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	4e-37	GRF family protein