PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G17789

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bZIP

Protein Properties

Length: 413aa MW: 43761.2 Da PI: 6.9749

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G17789	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.9	3.9e-22	310	372	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L+ eN +L++e+++++ e+++l se+ Ro05_G17789 310 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKDENATLRSEVSRIRSEYEQLLSEN 372 89**********************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MRLMGSSEMD KPAKEKEKEL KTTPPTTQEQ SATTSAGTVN PDWSGFQAYS PMPPHGFMAS 60 SPQAHPHPYM WGVQHIMPPY GTPPHPYVAM YPHGGLYAHP SMPPGSYPFS PFAMPSPNGI 120 VEASGNTPGS IEADGKPSEA KEKLPIKRSK GSLGSLNMIT GKNNELAKTS GASANGVYSK 180 SAESGSEGTS EGSDANSQSD SQLKSGGRGD SLEGDASQNG GSANGSQNGA PNSHTMLNPS 240 MAVVPITATG ASGAVPGPAT NLNIGMDYWG APSSAIPAIR GKVPSTPVAG GLVTSGSRDG 300 AQSQLWLQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEALKDE NATLRSEVSR 360 IRSEYEQLLS ENASLKERLG EVPGHEDLRP GRNDQHLSND TNQTAQTELH GGH

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MRLMGSSEMD KPAKEKEKEL KTTPPTTQEQ SATTSAGTVN PDWSGFQAYS PMPPHGFMAS  60
SPQAHPHPYM WGVQHIMPPY GTPPHPYVAM YPHGGLYAHP SMPPGSYPFS PFAMPSPNGI  120
VEASGNTPGS IEADGKPSEA KEKLPIKRSK GSLGSLNMIT GKNNELAKTS GASANGVYSK  180
SAESGSEGTS EGSDANSQSD SQLKSGGRGD SLEGDASQNG GSANGSQNGA PNSHTMLNPS  240
MAVVPITATG ASGAVPGPAT NLNIGMDYWG APSSAIPAIR GKVPSTPVAG GLVTSGSRDG  300
AQSQLWLQDE RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEALKDE NATLRSEVSR  360
IRSEYEQLLS ENASLKERLG EVPGHEDLRP GRNDQHLSND TNQTAQTELH GGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	327	333	RRSRLRK
2	327	334	RRSRLRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35530.1	1e-152	bZIP family protein