PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16445

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HD-ZIP

Protein Properties

Length: 343aa MW: 38535.8 Da PI: 4.7234

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16445	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	93	146	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F ++++ e++ LAk lgL+ rqV +WFqNrRa++k Ro05_G16445 93 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWK 146 56689************************************************9 PP
2	HD-ZIP_I/II	125.9	1.9e-40	93	183	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkrrl+++qv++LE+sF+ e+kLeperK la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y +lk++ ++L+k +++L++e+ Ro05_G16445 93 KKRRLTADQVQFLEKSFDLENKLEPERKILLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQANYTSLKADCDSLSKVNDKLKAEVL 183 9**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MAGSGRVYNS SGGASSSLSV LLQNQRGSEP LDSLFLSGSS NASSTSPFLG STSMVSFEDV 60 RRGNGLKRSM FHQYELEENC DEDLDDYFHQ PGKKRRLTAD QVQFLEKSFD LENKLEPERK 120 ILLAKDLGLQ PRQVAIWFQN RRARWKTKQL EKDYDVLQAN YTSLKADCDS LSKVNDKLKA 180 EVLELSDRLR LRDKERANSE QSDTNKLPQE PPQMPISESV SEGEVSKLSV VACKEDLGSV 240 KSDIFDSDSP HYTDGVHSSL LEPGDSSYVF EPDQSDLSQD EEDNLSKSLL PPYIFPKLED 300 VDYSDPPANS SILVTDHHQL TGAHEKKMNK LGKQPPTYQM MMV

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MAGSGRVYNS SGGASSSLSV LLQNQRGSEP LDSLFLSGSS NASSTSPFLG STSMVSFEDV  60
RRGNGLKRSM FHQYELEENC DEDLDDYFHQ PGKKRRLTAD QVQFLEKSFD LENKLEPERK  120
ILLAKDLGLQ PRQVAIWFQN RRARWKTKQL EKDYDVLQAN YTSLKADCDS LSKVNDKLKA  180
EVLELSDRLR LRDKERANSE QSDTNKLPQE PPQMPISESV SEGEVSKLSV VACKEDLGSV  240
KSDIFDSDSP HYTDGVHSSL LEPGDSSYVF EPDQSDLSQD EEDNLSKSLL PPYIFPKLED  300
VDYSDPPANS SILVTDHHQL TGAHEKKMNK LGKQPPTYQM MMV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	RRARWKTKQ
2	191	196	LRDKER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-42	HD-ZIP family protein