PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G16312

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

MYB

Protein Properties

Length: 446aa MW: 51006.2 Da PI: 9.6927

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G16312	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	25	72	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll++++ ++G g+W++ a++ g++Rt+k+c++rw++yl Ro05_G16312 25 RGPWTLEEDTLLIQYIGRHGEGRWNLLANRAGLRRTGKSCRLRWLNYL 72 89********************************************97 PP
2	Myb_DNA-binding	52	1.6e-16	78	121	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++ ++d++ ++G++ W++Ia++++ gRt++++k++w++ Ro05_G16312 78 RGNLTPEEQLMILDLHSKWGNR-WSKIAQYLP-GRTDNEIKNYWRT 121 7999****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MRAAMSTNTK SLSSSSSEDD NELRRGPWTL EEDTLLIQYI GRHGEGRWNL LANRAGLRRT 60 GKSCRLRWLN YLKPDVKRGN LTPEEQLMIL DLHSKWGNRW SKIAQYLPGR TDNEIKNYWR 120 TRVQKQAKHL KIDTNSGEFQ NIIRCFWMPR LLQKIGDQNQ LAASHQHSIT APPPQLPQFT 180 EQGAVSMSGF IHDLDIKKQD TESSSCIVPS ELPMEMSNIS QFSECYPYSP FGGAIVNNDQ 240 IINQDMEIFT LGNSAAAGNC YKIHKDKDAE PTEFEETVAQ SIFDLENTNQ ELKSDLKDLY 300 INSAALVDVA GNRKAVVIHV PYRLRKAYRK IHVRLVRELE KKFSGKDVIL IATRRIVRPP 360 KKGSAAQRPR TRTLTAVHEA ILEDVVLPAE IVGKRTRYRL DGSKIMKVFL DPKERNNTEY 420 KLESFSAVYR KLSGKDVVFE YPITEA

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MRAAMSTNTK SLSSSSSEDD NELRRGPWTL EEDTLLIQYI GRHGEGRWNL LANRAGLRRT  60
GKSCRLRWLN YLKPDVKRGN LTPEEQLMIL DLHSKWGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQAKHL KIDTNSGEFQ NIIRCFWMPR LLQKIGDQNQ LAASHQHSIT APPPQLPQFT  180
EQGAVSMSGF IHDLDIKKQD TESSSCIVPS ELPMEMSNIS QFSECYPYSP FGGAIVNNDQ  240
IINQDMEIFT LGNSAAAGNC YKIHKDKDAE PTEFEETVAQ SIFDLENTNQ ELKSDLKDLY  300
INSAALVDVA GNRKAVVIHV PYRLRKAYRK IHVRLVRELE KKFSGKDVIL IATRRIVRPP  360
KKGSAAQRPR TRTLTAVHEA ILEDVVLPAE IVGKRTRYRL DGSKIMKVFL DPKERNNTEY  420
KLESFSAVYR KLSGKDVVFE YPITEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68320.1	1e-76	MYB family protein