PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G14850

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 566aa MW: 62648.4 Da PI: 7.8142

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G14850	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	101	150	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r ++ g+Wv+eIr+p++ +kr++lg+f t+e+Aa+a++ a+++l+ Ro05_G14850 101 PRYRGIR-CR-GGKWVSEIREPRK---TKRIWLGTFPTPEMAAAAYDVAALALKR 150 68**9.55.7*****843...5*********************9976 PP
2	AP2	57.3	3.9e-18	410	460	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e+r+p +k+ r++lg++ tae+Aa+a++ a+++l+g Ro05_G14850 410 PVYRGVRRRN-NNKWVCEVREP---NKKSRIWLGTYPTAEMAARAHDVAALALRG 460 68***887.8**9998...347***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MTDPNTPPTN VHQIIIDQPT PTQFPNLDFL PPQPPPPPPH PPPSQSLSLL LHHTCGTPTI 60 PIIPPTSEAP VVQQLQLHTP KQATVEKGKT AMASNSSGKH PRYRGIRCRG GKWVSEIREP 120 RKTKRIWLGT FPTPEMAAAA YDVAALALKR EDAILNFPTS VKSYPVPATM SAEDIRAAAA 180 AAAVAAAPTL QTSSDSRETP KVAQQQKDDD DVMNINNSFA SSVGGDFMDE EEIFGMPNLL 240 VDMAEGMLVS PPRINSPPSD YDSPGNSDGG DNCAVFLLNC SLMRVVVSSS PRDGSHSKIY 300 IKPSYSRFYF QNSKHKTQYT HSTRSITSKA KKPSRTMNSI SYQVSDSNNQ RLESVSSLDK 360 PESSSLSDTS VTTGRSTRGR STRSDEEVIL ASSRPKKRAG RRVFKETRHP VYRGVRRRNN 420 NKWVCEVREP NKKSRIWLGT YPTAEMAARA HDVAALALRG KQACLNFADS AWRLPVPVSN 480 DQLDIRRAAA EAAETFRPEE FGGVWSSCDE EEKDHYDEKV LVESEKSNEG FYVDDEALFD 540 MPIAEETIHT KDIFSLIFSY AFCLRL

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MTDPNTPPTN VHQIIIDQPT PTQFPNLDFL PPQPPPPPPH PPPSQSLSLL LHHTCGTPTI  60
PIIPPTSEAP VVQQLQLHTP KQATVEKGKT AMASNSSGKH PRYRGIRCRG GKWVSEIREP  120
RKTKRIWLGT FPTPEMAAAA YDVAALALKR EDAILNFPTS VKSYPVPATM SAEDIRAAAA  180
AAAVAAAPTL QTSSDSRETP KVAQQQKDDD DVMNINNSFA SSVGGDFMDE EEIFGMPNLL  240
VDMAEGMLVS PPRINSPPSD YDSPGNSDGG DNCAVFLLNC SLMRVVVSSS PRDGSHSKIY  300
IKPSYSRFYF QNSKHKTQYT HSTRSITSKA KKPSRTMNSI SYQVSDSNNQ RLESVSSLDK  360
PESSSLSDTS VTTGRSTRGR STRSDEEVIL ASSRPKKRAG RRVFKETRHP VYRGVRRRNN  420
NKWVCEVREP NKKSRIWLGT YPTAEMAARA HDVAALALRG KQACLNFADS AWRLPVPVSN  480
DQLDIRRAAA EAAETFRPEE FGGVWSSCDE EEKDHYDEKV LVESEKSNEG FYVDDEALFD  540
MPIAEETIHT KDIFSLIFSY AFCLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25480.1	1e-45	ERF family protein