PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G13831
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family HD-ZIP
Protein Properties Length: 803aa    MW: 89291.9 Da    PI: 5.5182
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G13831genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.9e-2191146156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e+lF+++++p+ ++r++L+  lgL+ rqVk+WFqNrR+++k
  Ro05_G13831  91 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 146
                  688999***********************************************998 PP
2START164.38.9e-522945183206
                  HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  a + ++elvk+ +a+ep+W++ s  eng+e l  +e+++               ++ea r+++vv+m++ +lv  +ld + +W e ++    ka+t++
  Ro05_G13831 294 AASSLEELVKMCTAAEPLWMRKS--ENGMEMLNAEERARMfpwplnfkqnssdMRTEATRDTAVVIMNSINLVDAFLDAN-KWMELFPsivsKAKTVQ 388
                  678899*****************..99******999999999**********99**************************.***************** PP

                  EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
        START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                  vis +      g lqlm+aelq+ splvp R+  f+Ry++q +++g+w+ivd  +ds      ++s+ R ++ pSg+li++++ng+s+vtwveh++++
  Ro05_G13831 389 VISADpsgqanGSLQLMYAELQVVSPLVPtREAHFLRYCQQnEEEGSWAIVDFPIDSFHGSF-QPSFPRYKRWPSGCLIQDMPNGYSRVTWVEHAEVE 485
                  ********************************************************999987.9********************************** PP

                  SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                  ++ +h+++ + v s++a+ga +w+a lqrqce+
  Ro05_G13831 486 EKPVHQIFSHYVYSSMAFGAHRWLAVLQRQCER 518
                  *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    
MYGDCQVMST IGGGNVVNSE TLFSSPIQNP NFNFMPFQPF SSILPKEETG LMIRGKEEMM  60
DSGSGSEHVE EKYSGNEQET EEQQQQQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR  120
QKLSLDLGLK PRQVKFWFQN RRTQMKAQQD RSDNVMLRAE NDTLKNENYR LQAALRNIIC  180
PNCGGPAMIG EIALDEHQLR LENARLREEL ERVCCLSGYP GGRQIQSMGA TAPLMAASLD  240
LDMNIYSRHF PDPMMSSCTD HHMIPMSMLP PEPSHFPEGG LLLDEEKSLA LKLAASSLEE  300
LVKMCTAAEP LWMRKSENGM EMLNAEERAR MFPWPLNFKQ NSSDMRTEAT RDTAVVIMNS  360
INLVDAFLDA NKWMELFPSI VSKAKTVQVI SADPSGQANG SLQLMYAELQ VVSPLVPTRE  420
AHFLRYCQQN EEEGSWAIVD FPIDSFHGSF QPSFPRYKRW PSGCLIQDMP NGYSRVTWVE  480
HAEVEEKPVH QIFSHYVYSS MAFGAHRWLA VLQRQCERVA SLMARNISDL GVIPSPEARR  540
NLMRLAQRMI RTFSVNMSTS SGQAWTALSD SPDDTVRITT RKVSEAGQPN GVILSAVSTT  600
WLPYSHYRVF ELLRDERRRA QLDVLSNGTS LQEVAHIANG SHPGNCISVL RVNVASNSTQ  660
NIELMLQESC TDQSGSLVVY ATMDVNDIQL AMSGENPSSI PLLPLGFAIV PVESTNEGTT  720
TTSPSVQDSS NSGCLMTVGL QILASPNPSA KLNLSTVTAI NNHLCNSVQQ IISALDNTST  780
TTDNGNNVGG GGSCSEPTAA SSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein