PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G46880.1 | ||||||||
Common Name | HB-7, HDG5, HDGL2-5, MQD22.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 826aa MW: 92120.4 Da PI: 5.1953 | ||||||||
Description | homeobox-7 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 112 | 167 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k AT5G46880.1 112 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMK 167 688999***********************************************998 PP | |||||||
2 | START | 143.1 | 2.7e-45 | 324 | 555 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 +a ++ qel k+ + eep+W k +n++e+++ f+ + ea++a +vv+m++ +lv +l+ +W+e++ AT5G46880.1 324 FAVSCVQELTKMCDTEEPLWIKKKsdkiggeiLCLNEEEYMRLFP---WpmenqnnkgdFLREASKANAVVIMNSITLVDAFLNAD-KWSEMFCsiva 417 67899****************999777776554456666666664...03345668999999************************.******99999 PP EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 78 kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe...sssvvRaellpSgiliepksnghsk 163 +a+t++ issg g l lm+aelq+lsplvp R+ +f+Ry +q + g w+ivd +d ++q++p ++++ R pSg++i++++ng+s+ AT5G46880.1 418 RAKTVQIISSGvsgasGSLLLMFAELQVLSPLVPtREAYFLRYVEQnAETGNWAIVDFPIDsfHDQMQPMntiTHEYKR---KPSGCIIQDMPNGYSQ 512 **********************************************99**********999444555555556777776...**************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v wvehv+++++++h+ + vksg+a+ga++w+ lqrqce+ AT5G46880.1 513 VKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 555 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.01E-20 | 101 | 170 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-21 | 106 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.589 | 109 | 169 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-18 | 110 | 173 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.77E-19 | 112 | 170 | No hit | No description |
Pfam | PF00046 | 3.6E-18 | 112 | 167 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 144 | 167 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 42.589 | 314 | 558 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.33E-29 | 315 | 557 | No hit | No description |
CDD | cd08875 | 9.17E-106 | 318 | 554 | No hit | No description |
SMART | SM00234 | 4.9E-27 | 323 | 555 | IPR002913 | START domain |
Pfam | PF01852 | 1.7E-37 | 324 | 555 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.55E-15 | 599 | 802 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000018 | anatomy | ovule primordium | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000229 | anatomy | flower meristem | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000282 | anatomy | trichome | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0004011 | anatomy | initial cell | ||||
PO:0006035 | anatomy | shoot system epidermis | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0009067 | anatomy | filament | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020020 | anatomy | nucellus | ||||
PO:0020041 | anatomy | stipule | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007131 | developmental stage | seedling development stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence Send to blast |
MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM 60 MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE LHDDEQPPPA KKKRYHRHTN 120 RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA 180 ENDNLKSENC HLQAELRCLS CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT 240 GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD 300 QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE 360 EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD AFLNADKWSE MFCSIVARAK 420 TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF 480 HDQMQPMNTI THEYKRKPSG CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF 540 GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ 600 SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE 660 VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE LMLQESCIDN SGSLIVYSTV 720 DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT 780 AKPNLSTVTT INNHLCATVN QITSALSNTI TPVIASSADV SNQEVS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 137 | 142 | DKQRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50511 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 334188231 | 0.0 | ||||
Genevisible | 248843_at | 0.0 | ||||
Expression Atlas | AT5G46880 | - | ||||
AtGenExpress | AT5G46880 | - | ||||
ATTED-II | AT5G46880 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in the L1 of apical inflorescence meristems, early flower primordia, carpel and stamen filament epidermis, ovule primordia, nucellus and chalaze. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G46880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G46880 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB013394 | 0.0 | AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001318750.1 | 0.0 | homeobox-7 | ||||
Refseq | NP_001330010.1 | 0.0 | homeobox-7 | ||||
Refseq | NP_199499.3 | 0.0 | homeobox-7 | ||||
Swissprot | Q9FJS2 | 0.0 | HDG5_ARATH; Homeobox-leucine zipper protein HDG5 | ||||
TrEMBL | A0A178UFV3 | 0.0 | A0A178UFV3_ARATH; HDG5 | ||||
STRING | AT5G46880.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4356 | 25 | 48 | Representative plant | OGRP9475 | 11 | 13 |
Link Out ? help Back to Top | |
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Phytozome | AT5G46880.1 |
Entrez Gene | 834733 |
iHOP | AT5G46880 |
wikigenes | AT5G46880 |