PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ro05_G11958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
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Family | ERF | ||||||||
Protein Properties | Length: 184aa MW: 20130.7 Da PI: 7.1305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.8 | 4.2e-16 | 19 | 70 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + ykG+r + +g+Wv+eIr+p+++ r++lg+++ +++Aa+a++aa +++ge Ro05_G11958 19 CLYKGIRMRA-WGKWVSEIRVPRSG---GRIWLGSYDAPDKAARAYDAALYCIYGE 70 56*****998.**********9543...8***********************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MDLATTSKSK KVRREKTPCL YKGIRMRAWG KWVSEIRVPR SGGRIWLGSY DAPDKAARAY 60 DAALYCIYGE CGRFNFPGDR RPVLPAGSTV SLSKEDIQHI AMNFASPQVT ESSRVSSTIK 120 AEVPSDKPTS SNVLGSKDMA SAYEVKGDSL APTCATGAGS ADSPEDFQLD DFLILDADWI 180 TDFY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 1e-41 | ERF family protein |