PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11950
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family NAC
Protein Properties Length: 292aa    MW: 33905.8 Da    PI: 6.1353
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11950genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.91.4e-2141361127
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvka...eekewyfFskrdkkyatgkrknr.atksgyWkatgkdkev 92 
                  +p+G+rFhPtdee++ +yL  k + ++++++++  +e+d+y ++ePw + +++ +   ++++++fF++ +kk++  +r  r + +sg+W++   +k++
  Ro05_G11950   4 VPVGVRFHPTDEEMIGHYLYMKNNPNSVTASTFvPPEFDLYgETEPWIIWEAYGGprlKHQDLFFFTRLKKKAN--TRIIRkIGSSGTWSQGEPSKPI 99 
                  599************************88877757888*99568*****7433223336678899998888764..4666636779************ PP

          NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                  ++k   k++ +g k+ L + ++  p+ ++  W m+ey+
  Ro05_G11950 100 FDKkknKDTPIGRKTKLRYENKLVPE-QHGCWYMEEYT 136
                  **95444445********99777777.899*******7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MDCVPVGVRF HPTDEEMIGH YLYMKNNPNS VTASTFVPPE FDLYGETEPW IIWEAYGGPR  60
LKHQDLFFFT RLKKKANTRI IRKIGSSGTW SQGEPSKPIF DKKKNKDTPI GRKTKLRYEN  120
KLVPEQHGCW YMEEYTSLHG AALHDYVICR FRENRNRSSS SSGAGAIRNC DNKRKYHYGD  180
NDDHSKPTKK PKSLRVAATT TTNENPDPEE QQQFDAVEMF HPHELFRNDD DQMAQPFSQH  240
QVVQVEDDQE NDAFLASLDQ WLNTDDPIDN DRILCLRETG YEIECRVDKI AI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-12NAC family protein