PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G11928

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 281aa MW: 32871.2 Da PI: 9.166

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G11928	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.1	5.8e-24	29	110	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li++r e+e++++ +k+ k+lWe+vs++m++rgf+r+++qCk+kw+nl ryk ++++ + ++cp+f++l+ Ro05_G11928 29 QWGPEETKELIAIRGELERDSSVAKRSKALWEAVSSRMADRGFSRTSEQCKCKWKNLLIRYKGKETSDPEI----GRKCPFFEELQ 110 7************************************************************99999985....678****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MYGGGGDEEE SVGLGGGMRM MVVTSPTGQW GPEETKELIA IRGELERDSS VAKRSKALWE 60 AVSSRMADRG FSRTSEQCKC KWKNLLIRYK GKETSDPEIG RKCPFFEELQ AVFTEREKNM 120 QRLLLESEAG TARSKKRVKK SRSGRSSDEL TDDPDEDEDD SIGNLKKRKA ERVILPRVSN 180 TTASFNSGTS TIPEMLKEFL KQQQRMEIEW REMMERRAQE RQLFEQEWRQ KMVKVERERL 240 MTEKAWRERE EQRRMREESR AERRDALITT ILNKLIDQTN F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	169	KRVKKSRSGRSSDELTDDPDEDEDDSIGNLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	4e-29	Trihelix family protein