PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11782
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 285aa    MW: 30368.9 Da    PI: 7.8377
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11782genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19153203255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Ro05_G11782 153 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAYRMRG 203
                  8********.***********9987..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MYGQSGSDAD FTLLDSIRRH LLGETGNPVT NSCAGPIFSR TSSFSSLYPC LTDNWGELPL  60
KEDDSEDMVL YGVLRDAVSV GWVPSLASGS ADTCSFGFSV KSEPCSYEFS VKSEPEEVLA  120
TVNRVPETNS AAAQPAQQSA QAKPAVVPAK GKHYRGVRQR PWGKFAAEIR DPAKNGARVW  180
LGTFETAEDA ALAYDRAAYR MRGSRALLNF PLRVNSGEPD PVRVTSKRSS PEPSSSSSES  240
GSPKRRKKVA AAAQAGLEMG SGIGQQQVGG QVGVSCTRGE QLLVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243249PKRRKKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-70ERF family protein