PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G11049
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 281aa    MW: 32347.6 Da    PI: 8.4002
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G11049genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-1656100348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+ Ed+llv++v+++ g +Wk Ia+ ++ gR + qc +rwqk+l
      Ro05_G11049  56 CWTEKEDKLLVELVRKFNGSNWKQIAAGIP-GRLDVQCLHRWQKVL 100
                      6*****************************.************986 PP
2Myb_DNA-binding60.92.8e-19106152148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ ++++v+++G ++W+ Ia+ ++ gR +kqc++rw+++l
      Ro05_G11049 106 KGYWTKEEDDCIIKLVEKYGARRWSVIAKFLP-GRIGKQCRERWYNHL 152
                      689*****************************.*************97 PP
3Myb_DNA-binding32.32.3e-10158191136
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 
                      +++WT+eE++ l  +++++G++ W+ Iar ++ gR 
      Ro05_G11049 158 KDAWTEEEEQTLTFYHQLYGNK-WAEIARFLP-GRK 191
                      689*******************.*********.885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MVKVKRDQIE EMVVHSEKKL GVQSRRLSDS NCDSPVSEPN PLSWRASGLI RRSSRCWTEK  60
EDKLLVELVR KFNGSNWKQI AAGIPGRLDV QCLHRWQKVL NPEIIKGYWT KEEDDCIIKL  120
VEKYGARRWS VIAKFLPGRI GKQCRERWYN HLSPAINKDA WTEEEEQTLT FYHQLYGNKW  180
AEIARFLPGR KRASQSADHA NFSGASCSTA LNILSLDEAG FNSTDSNSLD YVRGLSCLRH  240
KPETSDAYKS LGRCLEREFD AENDSEMANC DKVFSAYVYR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.26e-67MYB family protein