PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G09352
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 257aa    MW: 29235.1 Da    PI: 8.492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G09352genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.27e-06104123120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C k+F+r  nL+ H+
  Ro05_G09352 104 FSCHVCFKTFNRYNNLQMHM 123
                  89*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEPSEISSRF ARTLNLFPNE KEPDLVPNSH DLGFSCENPK SSSEDHNKLA EDEVTVALRI  60
GLPECSDGSA NSTEKEVSDH ENVTGEQKYW IPTREQILIG FTHFSCHVCF KTFNRYNNLQ  120
MHMWGHGSQY RRGPESLKGT QPRAMLGIPC YCCAEGCKNN IDYPRAKPLK DFRTLQTHYK  180
RKHGVKPFMC RKCGKLLAVK GDWRTHEKNC GKRWLCTCGS DFKHKRSLKD HMKAFGSGHS  240
PFPPSSFNED STAASFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-105C2H2 family protein