PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03603

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WOX

Protein Properties

Length: 324aa MW: 37406.1 Da PI: 9.5159

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03603	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.1	2.6e-22	86	145	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ Ro05_G03603 86 SRWNPTPEQLRALEELYRRgTRTPSAEQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 145 7***************99************************************97 PP
2	Wus_type_Homeobox	115.9	1.9e-37	85	147	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Ro05_G03603 85 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 147 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MWMMGYNDGG DFNMIPDSAF NGRKLRPLIP RPLSSPHNNN TSPSINTPPC FSRIHAASDF 60 LAQYHHLGEQ RGMREFNTVP QVVVSSRWNP TPEQLRALEE LYRRGTRTPS AEQIQQITAQ 120 LRRYGKIEGK NVFYWFQNHK ARERQKRRRQ MESRDDLQLM SSEHQKKELL GGASRTVYEV 180 EESKNWAPST NCMTTSLQDH QQESVKAGAE SRTDGWVQFD GEELHQLQQQ QRRNSLPVEK 240 NATWQMMQLS SLPDLTHLIN PTGCTTTTTT RTTVRTMDMD PKQLIKNHHN NPNYKTSPTS 300 CLKMHLDYVG RINAKELGLE KIAE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	4e-50	WOX family protein