PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G03334

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 532aa MW: 60702.5 Da PI: 8.1295

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G03334	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00093	297	317	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ Ro05_G03334 297 YCVVCGKKFKSEKQWKNHEQS 317 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MERRCHYEVL GLDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV 60 LSDPKERAWY DSHRSQILFA DPNAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA 120 DVFNKIYSNE LSFARKLGLG IDSVREAPAL GNLKCDYAQV TAFYNYWLGF CTVMDFCWAD 180 QYDVMAGPNR KVRRLMEEDN KKHRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER 240 ERKKKEEREK KKKLEKEKLD RAMAYEEPEW ARVDEDEEEE GNGVDEEEEE RKRNELYCVV 300 CGKKFKSEKQ WKNHEQSKKH KDKVAEFRES IGDEEVDDLG EQIREAMVAA GRKSKKNAAF 360 RVENEDPLVT GVHVENDGND VESMPMEYEN RKSTRRNGGA KKGKSKKTGG ETKKVDGNEI 420 NNGQSETANE NGNSDIKEST SDSVVETEST NDKEDDQIAR KKKSSKQTVE KKKENAKKEA 480 NSKSKNSSKG KKAKATSKNS SNACEACGEE FGSRNQLHKH LGDTGHASLK NQ

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MERRCHYEVL GLDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPNAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA  120
DVFNKIYSNE LSFARKLGLG IDSVREAPAL GNLKCDYAQV TAFYNYWLGF CTVMDFCWAD  180
QYDVMAGPNR KVRRLMEEDN KKHRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER  240
ERKKKEEREK KKKLEKEKLD RAMAYEEPEW ARVDEDEEEE GNGVDEEEEE RKRNELYCVV  300
CGKKFKSEKQ WKNHEQSKKH KDKVAEFRES IGDEEVDDLG EQIREAMVAA GRKSKKNAAF  360
RVENEDPLVT GVHVENDGND VESMPMEYEN RKSTRRNGGA KKGKSKKTGG ETKKVDGNEI  420
NNGQSETANE NGNSDIKEST SDSVVETEST NDKEDDQIAR KKKSSKQTVE KKKENAKKEA  480
NSKSKNSSKG KKAKATSKNS SNACEACGEE FGSRNQLHKH LGDTGHASLK NQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKVRRLMEEDNKKHRKKAKREYNDTVRGLAEFVKKRDK
2	201	209	KKHRKKAKR
3	223	245	KKRDKRVMDMMVKREEERERKKK
4	247	253	EREKKKK
5	460	497	RKVRRLMEEDNKKHRKKAKREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-147	C2H2 family protein