PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro05_G03251
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family Nin-like
Protein Properties Length: 345aa    MW: 40256.1 Da    PI: 6.3274
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro05_G03251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.83.3e-26180227552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  +s e++s+yF++pi++AAkeL+++lT+LK++CR++GI+RWPhRk++sl
  Ro05_G03251 180 LSRETISQYFYMPITQAAKELNIGLTLLKKRCRELGIRRWPHRKLTSL 227
                  7899*****************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    
MKSHHQSHSL LSNPNWVVSK DDNSFSFPPQ FSPVDFRRSG YAPVLDWKYE VPMMQDYSFV  60
DDLPFMETCM NLHHDPLYSS LDIQPIRSVF QEEDILFGDG NEIGSHNDLF ASGFERPNHH  120
QHQEEQQQKQ PLLLVHSNED QNGANREHLG EERQVKRRCM RIKEEKSSNS TRSCSSSRLL  180
SRETISQYFY MPITQAAKEL NIGLTLLKKR CRELGIRRWP HRKLTSLQTL IRNIQELGKE  240
DEESEEKLRN AIELLERERR LMEDAPDMQL EDNTKRLRQA CFKANYKKRK IMGMNLIDYQ  300
PHSSNFGTIS NCGGKSMANL DNRGDEEDEE IRSLLSDSFS SSIMI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.11e-40Nin-like family protein