PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01869

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

bHLH

Protein Properties

Length: 345aa MW: 38689.5 Da PI: 7.9219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01869	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.3	2.8e-08	178	225	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k a +L + ++Y++sLq Ro05_G01869 178 SHSLAERVRREKISERMKMLQRLVPGC----DKVTGRAVMLDEIINYVQSLQ 225 8***********************9....55599*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MAAFSYQHVL HHPFLFDSIF LPGTPTTTNN NHYLSQSHHP SEPFLVQEMN PVDRARAAES 60 SSCIDQSSTK VATISDNEPS VTKKQSPESS TAVDKLETGE QVTQKVMTPM EKKRRTRNCS 120 SLNYAQSKAK KQKKLDDAKK AEEEKKLKPT KEQVKAAEVE PPTGYIHVRA RRGQATDSHS 180 LAERVRREKI SERMKMLQRL VPGCDKVTGR AVMLDEIINY VQSLQNQVEF LSMKLASVNP 240 LFYDFGPDLG DFMVKPEPST FSTGPQCSPT QLTDFADTSS NNVTTTTTFP TASNNYPFLD 300 SLLLQQGPRP NAFVQDRESL MWDMEGQRQS FLNPSGLSNN LCSFN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MAAFSYQHVL HHPFLFDSIF LPGTPTTTNN NHYLSQSHHP SEPFLVQEMN PVDRARAAES  60
SSCIDQSSTK VATISDNEPS VTKKQSPESS TAVDKLETGE QVTQKVMTPM EKKRRTRNCS  120
SLNYAQSKAK KQKKLDDAKK AEEEKKLKPT KEQVKAAEVE PPTGYIHVRA RRGQATDSHS  180
LAERVRREKI SERMKMLQRL VPGCDKVTGR AVMLDEIINY VQSLQNQVEF LSMKLASVNP  240
LFYDFGPDLG DFMVKPEPST FSTGPQCSPT QLTDFADTSS NNVTTTTTFP TASNNYPFLD  300
SLLLQQGPRP NAFVQDRESL MWDMEGQRQS FLNPSGLSNN LCSFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	134	KKRRTRNCSSLNYAQSKAKKQKK
2	112	148	KKRRTRNCSSLNYAQSKAKKQKKLDDAKKAEEEKKLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-56	bHLH family protein