PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro05_G01799

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 769aa MW: 83629.6 Da PI: 5.6314

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro05_G01799	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.2	6.3e-30	93	177	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++r++k+Ckek+en++k+yk++keg+ +r++++s +++f++lea Ro05_G01799 93 RWPRQETLALLRIRSEMDVAFRDATLKGPLWEDVSRKLAELGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YKFFSELEA 177 8*******************************************************************866665..****985 PP
2	trihelix	106.8	1.5e-33	495	580	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+ +e+r++++ k+plWee+s+ m++ g++r+pk+Ckekwen+nk++kk+ke++k r +e+ +tcpyf++l+a Ro05_G01799 495 RWPKAEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMQRMGYKRNPKRCKEKWENINKYFKKVKESNKAR-PEDAKTCPYFHELDA 580 8******************************************************************98.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 769 aa Download sequence
MQQQHGSQSH YGGGGGVVSS AEAATAAPPS MAAEADQTHV VEEASPISSR PPAGAISAVN 60 LDELMTLSGA AADVAADQGG GSGGGGGGGG GNRWPRQETL ALLRIRSEMD VAFRDATLKG 120 PLWEDVSRKL AELGYKRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYK FFSELEALHG 180 TATPNVSASP PVHVTTAAAT NNPASIGFGS ISNPMPISSF RMTPPTTTTI PVIPSQVAGT 240 IPIMPSSQQP STTAAPMDIN FSSNSSSSSH GDEDDYEDDD DVAGEPSSTS RKRKRGTSSS 300 RDSGGSTRRM MEFFEILMKQ VMQKQETMQQ RFLEVIEKRE QDRNIREEAW KRQEMARLTR 360 EHDLMTQERA ISASRDAAII AFLQKITGQT IQLPPPLNVH NAPPPPVPPS VSVHVTPVSA 420 PPPPPPPQQP VQLHQHQHQQ QTPIAQISRH HQIQPSITPN PTEVVMVVPE QQMAPPQENV 480 AGSGGGFEAT TSSSRWPKAE VLALIKLRSG LETRYQEAGP KGPLWEEISA GMQRMGYKRN 540 PKRCKEKWEN INKYFKKVKE SNKARPEDAK TCPYFHELDA LYRKRILGGG SSGGGGSSSS 600 LGNQNSQQQP PEHPKLDSAT QGTVAASVPA PQTQGTVAAT DQSVNKSGDQ STNLQKNLFG 660 DGPEEAAKKP EDIVKELMGQ QQHHHQEVLN HQGPQQLLVE DYDRVEEADS DINLDQEEDE 720 EDDEDEEDEE MDDESRKMDY KIEFQKQQNT GPSTNGGGNG ATSFLAMVQ

Sequence ? help Back to Top

Protein Sequence Length: 769 aa Download sequence

MQQQHGSQSH YGGGGGVVSS AEAATAAPPS MAAEADQTHV VEEASPISSR PPAGAISAVN  60
LDELMTLSGA AADVAADQGG GSGGGGGGGG GNRWPRQETL ALLRIRSEMD VAFRDATLKG  120
PLWEDVSRKL AELGYKRNAK KCKEKFENVH KYYKRTKEGR AGRQDGKSYK FFSELEALHG  180
TATPNVSASP PVHVTTAAAT NNPASIGFGS ISNPMPISSF RMTPPTTTTI PVIPSQVAGT  240
IPIMPSSQQP STTAAPMDIN FSSNSSSSSH GDEDDYEDDD DVAGEPSSTS RKRKRGTSSS  300
RDSGGSTRRM MEFFEILMKQ VMQKQETMQQ RFLEVIEKRE QDRNIREEAW KRQEMARLTR  360
EHDLMTQERA ISASRDAAII AFLQKITGQT IQLPPPLNVH NAPPPPVPPS VSVHVTPVSA  420
PPPPPPPQQP VQLHQHQHQQ QTPIAQISRH HQIQPSITPN PTEVVMVVPE QQMAPPQENV  480
AGSGGGFEAT TSSSRWPKAE VLALIKLRSG LETRYQEAGP KGPLWEEISA GMQRMGYKRN  540
PKRCKEKWEN INKYFKKVKE SNKARPEDAK TCPYFHELDA LYRKRILGGG SSGGGGSSSS  600
LGNQNSQQQP PEHPKLDSAT QGTVAASVPA PQTQGTVAAT DQSVNKSGDQ STNLQKNLFG  660
DGPEEAAKKP EDIVKELMGQ QQHHHQEVLN HQGPQQLLVE DYDRVEEADS DINLDQEEDE  720
EDDEDEEDEE MDDESRKMDY KIEFQKQQNT GPSTNGGGNG ATSFLAMVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	144	KRNAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	8e-52	Trihelix family protein