PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G36929

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

GATA

Protein Properties

Length: 752aa MW: 83210.1 Da PI: 8.5102

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G36929	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	25.3	2.1e-08	140	166	1	27
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCG 27 C+nCg+ ++ W +gp g+ktLC +CG Ro04_G36929 140 CQNCGAEQSLRWWEGPLGPKTLCLSCG 166 **************************9 PP
2	GATA	34.5	2.8e-11	419	446	1	28
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGl 28 C+nCg+ ++++W gp g+ktLC aCGl Ro04_G36929 419 CQNCGAEQSSQWLGGPLGPKTLCVACGL 446 ***************************9 PP
3	GATA	29.3	1.2e-09	599	629	1	31
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 C++Cg+ +T++W + p g+ktLCnaC ++ Ro04_G36929 599 CQHCGSEETTQWLSCPLGPKTLCNACYNWFK 629 **************************76665 PP
4	GATA	51.4	1.5e-16	657	688	1	32
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 C++Cg+ TplWR gp g+ktLCnaCG+++ k Ro04_G36929 657 CQHCGVEVTPLWRPGPLGSKTLCNACGIRWYK 688 ******************************66 PP

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence
MKSKKDSFPA VEILNILEQP SGVVIAEQQS PVLVLENSTN RSATLISSCG TNEPPHQTPK 60 KFMGQQQLFC NQANNKPNKK DTANVEIEGN SPATMRSCGM LESPHQVPSE FLGQQQLFCN 120 QPNNESNKKD TGKVRIQGKC QNCGAEQSLR WWEGPLGPKT LCLSCGRLAK YTARQQRSIA 180 NSTTTLMKLK KDLFPAVETL NISDQPSVIV IAEQQSPVFV LENTAKRISG TVDPTHQAPS 240 EFLGQQQEQF CDQANNKPKE NDTATVEIEG NSTTLISSSG TLDPPHQAPN EFLEEQQLFC 300 KQANNKPNKK DTARVESEGN STTLMSSCRT PKPPHQAQSE FLGQQQLFCN QANHETNKGN 360 TAKVESDGNS TTLLSSCRTP EPTHQALNEF LGQQKLFCNQ ANNETNKENT AEVEIKGKCQ 420 NCGAEQSSQW LGGPLGPKTL CVACGLAKCT AKQQRCIAVE VGKLCCPLPA TGEFSNSTRT 480 VPALEEFFPS QKPSDKAIAE HQKPFSVLEN STNNSTTLMC SCRINTPHRA RSKGLRRRRS 540 TIIPGQQVGV ESKCLHCGKQ TQRWWMGHLG PTTLCNACGN RDEPLWGRSG VTVDIAKKCQ 600 HCGSEETTQW LSCPLGPKTL CNACYNWFKY GRRQFCNQTN NNPDKKASAK VEIRRKCQHC 660 GVEVTPLWRP GPLGSKTLCN ACGIRWYKFG DLCREYRPAS KPTFSRELRS NCYRKVTGMK 720 KQDIGVEMVV EPVDQKNTIG FKIQNLQSLG DF

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence

MKSKKDSFPA VEILNILEQP SGVVIAEQQS PVLVLENSTN RSATLISSCG TNEPPHQTPK  60
KFMGQQQLFC NQANNKPNKK DTANVEIEGN SPATMRSCGM LESPHQVPSE FLGQQQLFCN  120
QPNNESNKKD TGKVRIQGKC QNCGAEQSLR WWEGPLGPKT LCLSCGRLAK YTARQQRSIA  180
NSTTTLMKLK KDLFPAVETL NISDQPSVIV IAEQQSPVFV LENTAKRISG TVDPTHQAPS  240
EFLGQQQEQF CDQANNKPKE NDTATVEIEG NSTTLISSSG TLDPPHQAPN EFLEEQQLFC  300
KQANNKPNKK DTARVESEGN STTLMSSCRT PKPPHQAQSE FLGQQQLFCN QANHETNKGN  360
TAKVESDGNS TTLLSSCRTP EPTHQALNEF LGQQKLFCNQ ANNETNKENT AEVEIKGKCQ  420
NCGAEQSSQW LGGPLGPKTL CVACGLAKCT AKQQRCIAVE VGKLCCPLPA TGEFSNSTRT  480
VPALEEFFPS QKPSDKAIAE HQKPFSVLEN STNNSTTLMC SCRINTPHRA RSKGLRRRRS  540
TIIPGQQVGV ESKCLHCGKQ TQRWWMGHLG PTTLCNACGN RDEPLWGRSG VTVDIAKKCQ  600
HCGSEETTQW LSCPLGPKTL CNACYNWFKY GRRQFCNQTN NNPDKKASAK VEIRRKCQHC  660
GVEVTPLWRP GPLGSKTLCN ACGIRWYKFG DLCREYRPAS KPTFSRELRS NCYRKVTGMK  720
KQDIGVEMVV EPVDQKNTIG FKIQNLQSLG DF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24050.1	2e-24	GATA family protein