PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G27331

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

AP2

Protein Properties

Length: 553aa MW: 59655 Da PI: 7.4961

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G27331	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.6	4.6e-11	193	249	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +++Aa+a++ a++k++g Ro04_G27331 193 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 249 57*****************5444.2455535555.7799999***********98 PP
2	AP2	47.1	5.9e-15	292	343	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Ro04_G27331 292 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 343 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 553 aa Download sequence
MDSNSPHHHH HHQNWLGFSL SNHFSSPPNN SHLSLFEAFT SSPDTVVNSA PSDHHHHQDA 60 HAGATATDLS IFSGVGPKLE DFLGGGCTST STAVATSTAD VITTASATPM SLAHFSSSTS 120 TDPLAVSENN EIYDSELKTI AASFLRGFST TAAAAAAATT LQQTKPQTQN HAVGSTETAT 180 PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEDKAARAY 240 DLAALKYWGP TTTTNFPVTN YEKELTEMKI MSRQEFVASL RRKSSGFSRG ASIYRGVTRH 300 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI 360 ANSNLPIGGM SGKSKNSSDQ SLSADSKSLD DRDLSSASSV TFASSSHHQP SNSSTLSFAI 420 PIKQDSSPDY WSNIFGYHPN NNPPSLSNAR NPNSVGVAPT YFHGNMDFSA TSSTAATTSA 480 SETNNGLFFS GGYNVHGQLQ QQSTSSGTNN SIPFSTPIAL NSNMGYDQSS SSGYGTWIGP 540 SLNLFQTPIF GME

Sequence ? help Back to Top

Protein Sequence Length: 553 aa Download sequence

MDSNSPHHHH HHQNWLGFSL SNHFSSPPNN SHLSLFEAFT SSPDTVVNSA PSDHHHHQDA  60
HAGATATDLS IFSGVGPKLE DFLGGGCTST STAVATSTAD VITTASATPM SLAHFSSSTS  120
TDPLAVSENN EIYDSELKTI AASFLRGFST TAAAAAAATT LQQTKPQTQN HAVGSTETAT  180
PKKTVDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEDKAARAY  240
DLAALKYWGP TTTTNFPVTN YEKELTEMKI MSRQEFVASL RRKSSGFSRG ASIYRGVTRH  300
HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKSI  360
ANSNLPIGGM SGKSKNSSDQ SLSADSKSLD DRDLSSASSV TFASSSHHQP SNSSTLSFAI  420
PIKQDSSPDY WSNIFGYHPN NNPPSLSNAR NPNSVGVAPT YFHGNMDFSA TSSTAATTSA  480
SETNNGLFFS GGYNVHGQLQ QQSTSSGTNN SIPFSTPIAL NSNMGYDQSS SSGYGTWIGP  540
SLNLFQTPIF GME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-139	AP2 family protein