PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G25843
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family C2H2
Protein Properties Length: 121aa    MW: 13694.6 Da    PI: 7.5596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G25843genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.3e-064365123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++Cg+ F ++  L  H++ H
  Ro04_G25843 43 FECHYCGREFESSQALGGHQNAH 65
                 89******************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    
MSASAADHGT KPSSPSAMKL FGFSLLTADN CEDRAAMTKS KKFECHYCGR EFESSQALGG  60
HQNAHKKERK LARMAMLELE EDQREQYQRL LPPQVLFPTA ARVLPKDYEG DDHVLDLRLR  120
L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.11e-17C2H2 family protein