PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G22810
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GATA
Protein Properties Length: 409aa    MW: 45502 Da    PI: 8.827
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G22810genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.75.7e-17235268134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +Cg+ +Tp+WR gp g+ktLCnaCG++y++ +
  Ro04_G22810 235 CLHCGSDQTPQWRAGPLGPKTLCNACGVRYKSGR 268
                  99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    
MVPLDPAACL VDDLRNFLSD VGDHEGRPDD PSRPLSATRG VFMDRVCLQL GRVSALYGCR  60
PCVDAVGGFQ VWAELTGASW SKFGMILSPL SFDTTWRVAL VPQHGVCASM TESTLKPRRV  120
DSLDGFAEEA EEEELEWISN KDAFPAVETF ILSEQPGGIV IAKQQSPVSV LENSTNSSAS  180
LMSSCGALKP PHRARSKGRR RRSEIPAQQL FWNQPNDSKP SKTSSASKLD IGRKCLHCGS  240
DQTPQWRAGP LGPKTLCNAC GVRYKSGRLC PEYRPASSPT FSSEMHSNSH RKVLEMRKQK  300
YGMGMVVKPE DKDLTGVRPS LIPQRSSHLL QFTNGTFEMN RDLLIWDGKQ QYTVTIAWFL  360
EYTVAYAFPP KSHTQTRRFG TKPSQCPLHV ELTLSRKIFS LHVILCRLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-42GATA family protein