PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G18901
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 408aa    MW: 45245.5 Da    PI: 8.9717
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G18901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.4e-19216265356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  ++GVr+++ +g+WvAeIr p++   r+r++lg+f taeeAa a++ a+  l+ge
  Ro04_G18901 216 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFNTAEEAATAYDTAAYMLRGE 265
                  8******9.**********955...5*************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    
MKDKFPKIET FIPKQLPSYF PGIASSTRSN FLDDPAIWGV SGSKSSLSPE SSASSSADEV  60
SGNSRLINNT NPFVPVDFLE TFPELNRAHV SDHPPTSPPS LSSNTSKFPN LTLFLQEPTA  120
LINPSSTKKC DEPTFSSLST SFPVPQLEPI DHCQTGIDQW LKISQTLANN PSKGFNDYWL  180
SVTKTQPMKY SGRSRFQNQK EKQPSAPMPS AQGKLFRGVR QRHWGKWVAE IRLPRNRTRV  240
WLGTFNTAEE AATAYDTAAY MLRGEYAHLN FPDSKQQLKA NALNGSTSTT FALLEAKLQL  300
AISQQAEKKT NIIESSSSSS PSSPNKHKHK HSSADDRDQK NLNVIINSNL TSQNSSTRKE  360
RQFGSDEVII ESKKSQDVIS SSDVDAVQLS RMPSLDMDMI WDALLVSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-57ERF family protein