PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G13620.1 | ||||||||
Common Name | ERF062, F18A5.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 388aa MW: 44254.6 Da PI: 9.9831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.5e-19 | 231 | 281 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p++ r+r++lg+f tae+Aa a++ a+ l+ge AT4G13620.1 231 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 281 59******9.**********955...5************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.63E-31 | 230 | 290 | No hit | No description |
PROSITE profile | PS51032 | 22.682 | 231 | 288 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 231 | 289 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-32 | 231 | 289 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-35 | 231 | 294 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-12 | 232 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 232 | 243 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-11 | 254 | 270 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MITPIHTQHS LILVYINIYS PPILSKLRTG FILWTNTQKT NKKRNMEDQF PKIETSFMHD 60 KLLSSGIYGF LSSSTPPQLL GVPIFLEGMK SPLLPASSTP SYFVSPHDHE LTSSIHPSPV 120 ASVPWNFLES FPQSQHPDHH PSKPPNLTLF LKEPKLLELS QSESNMSPYH KYIPNSFYQS 180 DQNRNEWVEI NKTLTNYPSK GFGNYWLSTT KTQPMKSKTR KVVQTTTPTK LYRGVRQRHW 240 GKWVAEIRLP RNRTRVWLGT FETAEQAAMA YDTAAYILRG EFAHLNFPDL KHQLKSGSLR 300 CMIASLLESK IQQISSSQVS NSPSPPPPKV GTPEQKNHHM KMESGEDVMM KKQKSHKEVM 360 EGDGVQLSRM PSLDMDLIWD ALSFPHSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 230 | 288 | 4 | 63 | ATERF1 |
3gcc_A | 6e-21 | 230 | 288 | 4 | 63 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.33355 | 0.0 | root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30682551 | 0.0 | ||||
Expression Atlas | AT4G13620 | - | ||||
AtGenExpress | AT4G13620 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G13620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | ethylene |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search Q9SVQ0 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G13620 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL035528 | 0.0 | AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project). | |||
GenBank | AL161537 | 0.0 | AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37. | |||
GenBank | BT029729 | 0.0 | BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_193098.1 | 0.0 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SVQ0 | 0.0 | ERF62_ARATH; Ethylene-responsive transcription factor ERF062 | ||||
TrEMBL | A0A178UV11 | 0.0 | A0A178UV11_ARATH; Uncharacterized protein | ||||
STRING | AT4G13620.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10799 | 25 | 34 | Representative plant | OGRP11282 | 5 | 7 |
Link Out ? help Back to Top | |
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Phytozome | AT4G13620.1 |
Entrez Gene | 826996 |
iHOP | AT4G13620 |
wikigenes | AT4G13620 |
Publications ? help Back to Top | |||
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