PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G18048
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 627aa    MW: 70087 Da    PI: 5.4519
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G18048genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2813.5e-862486181374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl..fsevsPilkfsh 95 
                  lve Ll+ Ae +  ++ e+a++lL    +l+s +g+p++R+++yf eAL++++ r ++ +  k l  ++  +++ +  + + +    +   P+ ++ +
  Ro04_G18048 248 LVEFLLASAEKIGYQQYERATKLLDLCYKLSSDTGNPVERVVFYFSEALREKIDReTGRGAPKGLGNKQPFDMDKALMIGSETSlvCHTKLPFSQIVQ 345
                  57889**************************************************788899999977777777766666666653456778******* PP

         GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  ++  qaI+e v++++++H+iD++i +GlQ  aL+qaL+sR+++p  l i +vg    +ske++e+tge L+ fA+++++pf f+++++ ++ dl+ ++
  Ro04_G18048 346 FAGIQAIVEKVAEAKKIHVIDLEIRKGLQLTALMQALTSRDSPPELLTISAVGT---SSKESIEKTGEWLEGFAKTMNLPFAFKTVMVADMLDLKEDM 440
                  ******************************************************...58*************************************** PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  ++++++E++aV +++ l ++++++  les    ++++++++ P v+vv+e ea+hns+ F++rf+eal y+ a fd++e+ + r++ + +++E +++g
  Ro04_G18048 441 FEIESEETVAVFSMFVLRSMVRQPDRLES----IMRVMRTIHPCVMVVTEVEANHNSPVFVTRFIEALFYFGAYFDCVETCMKRNDPNTMSLESQYFG 534
                  *********************99999999....***************************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  + i+n+va+eg+er+ rh +   W++ + + G+++++ls++   qa+l+ ++++ +   ++  + ++++ gWk+ pL s+S W+
  Ro04_G18048 535 QGIRNIVAAEGEERKVRHVKIDVWKAFFARYGMEEMELSSSSLYQADLVAKNFScGSSCTISMDGKCMLVGWKGTPLHSLSLWK 618
                  ******************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    
MLGPKYHRAG LGQPRRSAPA IAIHEIVNSN EKKQGAKEFN FDGVQNKHRS NHEGFEGMEE  60
DIIGKQVHCS QVENLGESGG FGSLCSDYGI YGNGFSEGGG HFNKYQNQQQ LISDNYGLFD  120
DIQFQFSALS PPLQACLEEI SKLEDIPTLV PHVEAKKQRG DTFSVAGLDL LNNYGSGFKK  180
LNGERIFECS TDEVASGRKL STEEIMRVAG ARFIRTAAQV ADVPAMLSHP FEFSFAGLSY  240
EESRDVELVE FLLASAEKIG YQQYERATKL LDLCYKLSSD TGNPVERVVF YFSEALREKI  300
DRETGRGAPK GLGNKQPFDM DKALMIGSET SLVCHTKLPF SQIVQFAGIQ AIVEKVAEAK  360
KIHVIDLEIR KGLQLTALMQ ALTSRDSPPE LLTISAVGTS SKESIEKTGE WLEGFAKTMN  420
LPFAFKTVMV ADMLDLKEDM FEIESEETVA VFSMFVLRSM VRQPDRLESI MRVMRTIHPC  480
VMVVTEVEAN HNSPVFVTRF IEALFYFGAY FDCVETCMKR NDPNTMSLES QYFGQGIRNI  540
VAAEGEERKV RHVKIDVWKA FFARYGMEEM ELSSSSLYQA DLVAKNFSCG SSCTISMDGK  600
CMLVGWKGTP LHSLSLWKFV NLNIISR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-51GRAS family protein