PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G17961
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family WRKY
Protein Properties Length: 300aa    MW: 32684.9 Da    PI: 10.5908
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G17961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.1e-30221279259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+++dp+++++tYe eH+h+
  Ro04_G17961 221 SDEFSWRKYGQKPIKGSPYPRGYYKCSSVrGCPARKHVERAQDDPTMLVVTYEAEHRHP 279
                  69*************************988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MAIDLVRFSK IDDRRAMEEA ASAGLQSMEH LIRLLSNQTP SQTNLDCREI TDFTVGKFKQ  60
FISVLNRTGH ARFRRGPANP STTTTSTSPP PPANPVPPKP QANLSFESGN PNSNNSKSKS  120
KDCFTLSPPM STTSSFISSI TTGDGSVSNG KVFSSAAVPP APAFSAGKPP LSQSHRKRCH  180
DELAAKTTSS DRCHCSKRRK SKVKRTVRVP AISSKIADIP SDEFSWRKYG QKPIKGSPYP  240
RGYYKCSSVR GCPARKHVER AQDDPTMLVV TYEAEHRHPH PHPQSNSVPA GVVGLVFQSA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.17e-52WRKY family protein