PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G15165

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 562aa MW: 63337.6 Da PI: 7.6551

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G15165	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	101	119	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C+ Cgk F++ L H+ Ro04_G15165 101 VCKECGKGFPSLKALCGHM 119 6*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MEEDQNQQKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEEEDDE FARATTRIAK 60 LSSLDSGPEG QSGYRLRENP KKTWRFADHK VPSFQFQQEK VCKECGKGFP SLKALCGHMA 120 CHSEKEKRLE EIEEFSETSE KQKLVMDSQS DTETSSAPTK QRRVSKRLRE NNFEVHGGCS 180 SGSGVEQEQQ EVAISLMMLS RDSGYKGGLN SFGESSDNNS VILEGKSSSI DMRISTKRSL 240 SYAPRVNDAM NLKRAREIKL KCEEVTVSDN SDSGYYRHEP KKVESDVSVD GFVRNGEFKK 300 YRAELGSEFG GYESYDVKSR KGFSIKSEMV KDLPKEEAYE QVGRGSLKYA LRKTTKNGFH 360 RQFTSGSSSV EVYKNVKQSS KYECLTCNKT FHSHRALGGH RASHTKSNGY SESMYESGEN 420 SIDTDESPVP TPESKLVEDK KPCKGKNPIN QDLGAKRNSG SKRSKGHECP FCFRVFKSGQ 480 ALGGHKRSHF VGGCEVKTVV LGQQQQQQQQ EEEEEEPELE VPEHEAEIPT LFDLNLPAPM 540 EEEATGNFGF GMSQNIILLI IN

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MEEDQNQQKK FVCKFCNRRF QCGKSLGGHI RTHLNKKPTR EKEQEEEDDE FARATTRIAK  60
LSSLDSGPEG QSGYRLRENP KKTWRFADHK VPSFQFQQEK VCKECGKGFP SLKALCGHMA  120
CHSEKEKRLE EIEEFSETSE KQKLVMDSQS DTETSSAPTK QRRVSKRLRE NNFEVHGGCS  180
SGSGVEQEQQ EVAISLMMLS RDSGYKGGLN SFGESSDNNS VILEGKSSSI DMRISTKRSL  240
SYAPRVNDAM NLKRAREIKL KCEEVTVSDN SDSGYYRHEP KKVESDVSVD GFVRNGEFKK  300
YRAELGSEFG GYESYDVKSR KGFSIKSEMV KDLPKEEAYE QVGRGSLKYA LRKTTKNGFH  360
RQFTSGSSSV EVYKNVKQSS KYECLTCNKT FHSHRALGGH RASHTKSNGY SESMYESGEN  420
SIDTDESPVP TPESKLVEDK KPCKGKNPIN QDLGAKRNSG SKRSKGHECP FCFRVFKSGQ  480
ALGGHKRSHF VGGCEVKTVV LGQQQQQQQQ EEEEEEPELE VPEHEAEIPT LFDLNLPAPM  540
EEEATGNFGF GMSQNIILLI IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	8e-92	C2H2 family protein