PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G12911
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family bHLH
Protein Properties Length: 199aa    MW: 22425.9 Da    PI: 8.9738
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G12911genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.85.9e-11249454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +h ++Er+RR+++N+ +  Lr+l P     + k+ + a+i   ++e+Ik+L
  Ro04_G12911  2 SHIAVERNRRKQMNEHLKVLRSLTPCF---YIKRGDQASIIGGVIEFIKEL 49
                 89************************9...9******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSHIAVERNR RKQMNEHLKV LRSLTPCFYI KRGDQASIIG GVIEFIKELH QVLQSLESNK  60
RRRKSLSPSP NPSPRQPLLL LPPQLDQSPK FNFGLIDQNH DRVVKELGAC CNSPVADVEA  120
KISGSNVVLK IISRRTPGQV VKIISVLERS SFEVLHLNIS SMEDTVLYSF VIKIGLECQL  180
SVEELVFEVQ QSLRSDDTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.11e-78bHLH family protein