PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G07125

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

SBP

Protein Properties

Length: 463aa MW: 50942.8 Da PI: 8.3206

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G07125	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	75.2	1e-23	224	277	1	54
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelse 54 +CqvegC+ dls+ak+yhr+h++C hsk+p+v+v+g+e+rfCqqCsr+ + +e Ro04_G07125 224 RCQVEGCNIDLSSAKDYHRKHRICANHSKSPKVVVNGVERRFCQQCSRWEATHE 277 6***********************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MVTFTKRVEN EAAHGREGGP KHNISVRVRA SGPVLLSGLD QTEVRMPWNE KPPSLWDWEN 60 IFMFEAKVTE NPKKLQPTDW SVEGERGMNS ESFYSPGGDR GSGVSGSDLG DGTSKSSKSG 120 SVNSSVGESK KSNFSLEAFE GFPKDFVDKK ESARVEALGS SPIHEISAGS GEPLLSLKLG 180 KRMYFEDVCA GNNAKTSAVS VISTPMGTKG KRFKATGQST VATRCQVEGC NIDLSSAKDY 240 HRKHRICANH SKSPKVVVNG VERRFCQQCS RWEATHEPCF GPSLKACYKF IMGWLMFTQT 300 KDYFPNPEKG GGTSSQLSLA ENRTPSSLTM LYQDSSRLSP AKGTASQVLN RGAEESMISF 360 NLDAPQDLKR ALSLLSTSSW ASCEAKAVSL DNTNHSYHTN RPQPVMQAMT QGLPMSSQYW 420 QNEQPSLETT QAHFSHSQSN GSNHFQDHMF KGYEFGYNTN QFN

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MVTFTKRVEN EAAHGREGGP KHNISVRVRA SGPVLLSGLD QTEVRMPWNE KPPSLWDWEN  60
IFMFEAKVTE NPKKLQPTDW SVEGERGMNS ESFYSPGGDR GSGVSGSDLG DGTSKSSKSG  120
SVNSSVGESK KSNFSLEAFE GFPKDFVDKK ESARVEALGS SPIHEISAGS GEPLLSLKLG  180
KRMYFEDVCA GNNAKTSAVS VISTPMGTKG KRFKATGQST VATRCQVEGC NIDLSSAKDY  240
HRKHRICANH SKSPKVVVNG VERRFCQQCS RWEATHEPCF GPSLKACYKF IMGWLMFTQT  300
KDYFPNPEKG GGTSSQLSLA ENRTPSSLTM LYQDSSRLSP AKGTASQVLN RGAEESMISF  360
NLDAPQDLKR ALSLLSTSSW ASCEAKAVSL DNTNHSYHTN RPQPVMQAMT QGLPMSSQYW  420
QNEQPSLETT QAHFSHSQSN GSNHFQDHMF KGYEFGYNTN QFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.1	8e-47	SBP family protein