PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G02811

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

WRKY

Protein Properties

Length: 1572aa MW: 179207 Da PI: 5.6354

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G02811	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	105	4e-33	699	755	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+g Hnh+ Ro04_G02811 699 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGAHNHQ 755 8**************************************.*************8 PP
2	WRKY	94.8	6.1e-30	800	859	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEE.E-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkve.rsaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY Ct++gC+v+k+ve r+a+dpk+v++tYeg Hnh+ Ro04_G02811 800 LDDGYRWRKYGQKVVKGNPYPRSYYACTFQGCNVRKHVEiREATDPKAVITTYEGIHNHD 859 59***********************************77899*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 1572 aa Download sequence
MELSSLSPLL SYLEFPSSWR KRRSSIYNVV AQRLSTYSTC MRSFSSEMES PPESVDYFGA 60 GTTEKDQGSK VGQVADEHES LPQHLKRLFL YCSLFPSGYE FSKDELIQLW IAEGFIRERQ 120 NQRMEDTASE HFNSLEKEGF FLLSRGDFTS VLSAPTGNFL YKVNPIKHSI LEDTISSGNY 180 FRAVDGKLDG ASEMTRHLSL ICEDIDGMTF GILQNFKHLR TLHLLSCCGS SIKHVPRDFC 240 FTLMFLRTLN LSGTLISELP SSIGNVKSLR YIDASHTPIS RLPESIDSLH KLQTIKLRGC 300 VHFVQLPKGM KKLTNLRHID LDIIRQLDSM PAHLGNLRNL QTLPAFLVGR DEGCHVGELK 360 NLNDLNGALN ISRLENVLSK EEAGEAALVD KKGIHSLELR WSNHFVEYAE QQEKVLECLQ 420 PHSGLKELQI QQYSGSILPT WISNPAFADL VVIFLYRCRN CKLLPCLGQL PALKSLSIIE 480 VNEVKEINHQ FFRNGPVDHA FPKLERLEVD IMLNLKEWKD VQMGDLPSLV KLTVDSCPEL 540 VTIPPLSCLK SLKHLEFRRC PKLLSLSTDG LPTSLESFLI LDCLELEEWC LNSEHWSLLC 600 HLPSVWFDNE EGAFGMTRHQ DLAQVTAQAS HSQSYTFHIP NEHSTSMTQL PVSTSSTTAP 660 QEMTSGIPDS VVTMKESSDI SHADQRSQLS SLTVDKPNDD GYNWRKYGQK QVKGSEFPRS 720 YYKCTHPSCP VKKKVERSVD GQITEIIYKG AHNHQRPQSN PKDSGNQNEN VQVNHDLASA 780 HRTVTEPRMI VQTTSEVDQL DDGYRWRKYG QKVVKGNPYP RSYYACTFQG CNVRKHVEIR 840 EATDPKAVIT TYEGIHNHDV PASKTGSHYA ANNNASNLKS GNPGTEKHAS VTRMDPRNND 900 QVWEADQTMI FESSSNEATE YLNTVEEIRQ LIESLECLCL DKDSENYELL HKANNVLQTS 960 MARLEEEFRY MLLQNRLLCA PEHMSFRSCE ENTFDENSLM SFGFDPVEDS FDENSLMSFG 1020 FDSVEDSLHR SVSSLSEDSI IDLDFPEVIP DLIDLDFPEV IPDLIDLIRP EVIPDLRCIA 1080 HMMFNCNYDQ ECTQAYTTLR RDALDECLWY LEIQKLSIED VRKMDWVSLN SKIRTWVWVM 1140 KIFVRIYLAS EKWLSEQIFG ELGPVRLDCF VEASKASILQ LLNFAEAMSI GPHQPEKLVR 1200 ILDMYEVLAD LLPDIDALYF GEAGSSVSME CHDVLLRLGD SVKAIVFEFE NAIASNPSTY 1260 PVSGGGIHPL TRYVMNYMRT LTDYGQTLNL LLKDCDEVDP ISLSADMSPT AEEENNSTDS 1320 SGRKSPMARQ FLTFASSLES NLDEKSKLYK DASLQHVFLM NNIHYMAQKV KGGELRLIFE 1380 DDWIRERHRK FQQHAMSYQR ASWRYILSLL KEEGIQNPGS NSISKSLLQE RLRSFYLAFE 1440 EIYKVQTAWL IPDPQLREDL QISTSLNVIQ AYRTFVGRHS NDISDKFIRY STDDMENYIM 1500 DLFEGSPKLL QNSSRSSSTV KHVWNINWVR TAPTFPPPPV IPDMTPNDLK NGDRNLKTPR 1560 KLSKLFSRRL IK

Sequence ? help Back to Top

Protein Sequence Length: 1572 aa Download sequence

MELSSLSPLL SYLEFPSSWR KRRSSIYNVV AQRLSTYSTC MRSFSSEMES PPESVDYFGA  60
GTTEKDQGSK VGQVADEHES LPQHLKRLFL YCSLFPSGYE FSKDELIQLW IAEGFIRERQ  120
NQRMEDTASE HFNSLEKEGF FLLSRGDFTS VLSAPTGNFL YKVNPIKHSI LEDTISSGNY  180
FRAVDGKLDG ASEMTRHLSL ICEDIDGMTF GILQNFKHLR TLHLLSCCGS SIKHVPRDFC  240
FTLMFLRTLN LSGTLISELP SSIGNVKSLR YIDASHTPIS RLPESIDSLH KLQTIKLRGC  300
VHFVQLPKGM KKLTNLRHID LDIIRQLDSM PAHLGNLRNL QTLPAFLVGR DEGCHVGELK  360
NLNDLNGALN ISRLENVLSK EEAGEAALVD KKGIHSLELR WSNHFVEYAE QQEKVLECLQ  420
PHSGLKELQI QQYSGSILPT WISNPAFADL VVIFLYRCRN CKLLPCLGQL PALKSLSIIE  480
VNEVKEINHQ FFRNGPVDHA FPKLERLEVD IMLNLKEWKD VQMGDLPSLV KLTVDSCPEL  540
VTIPPLSCLK SLKHLEFRRC PKLLSLSTDG LPTSLESFLI LDCLELEEWC LNSEHWSLLC  600
HLPSVWFDNE EGAFGMTRHQ DLAQVTAQAS HSQSYTFHIP NEHSTSMTQL PVSTSSTTAP  660
QEMTSGIPDS VVTMKESSDI SHADQRSQLS SLTVDKPNDD GYNWRKYGQK QVKGSEFPRS  720
YYKCTHPSCP VKKKVERSVD GQITEIIYKG AHNHQRPQSN PKDSGNQNEN VQVNHDLASA  780
HRTVTEPRMI VQTTSEVDQL DDGYRWRKYG QKVVKGNPYP RSYYACTFQG CNVRKHVEIR  840
EATDPKAVIT TYEGIHNHDV PASKTGSHYA ANNNASNLKS GNPGTEKHAS VTRMDPRNND  900
QVWEADQTMI FESSSNEATE YLNTVEEIRQ LIESLECLCL DKDSENYELL HKANNVLQTS  960
MARLEEEFRY MLLQNRLLCA PEHMSFRSCE ENTFDENSLM SFGFDPVEDS FDENSLMSFG  1020
FDSVEDSLHR SVSSLSEDSI IDLDFPEVIP DLIDLDFPEV IPDLIDLIRP EVIPDLRCIA  1080
HMMFNCNYDQ ECTQAYTTLR RDALDECLWY LEIQKLSIED VRKMDWVSLN SKIRTWVWVM  1140
KIFVRIYLAS EKWLSEQIFG ELGPVRLDCF VEASKASILQ LLNFAEAMSI GPHQPEKLVR  1200
ILDMYEVLAD LLPDIDALYF GEAGSSVSME CHDVLLRLGD SVKAIVFEFE NAIASNPSTY  1260
PVSGGGIHPL TRYVMNYMRT LTDYGQTLNL LLKDCDEVDP ISLSADMSPT AEEENNSTDS  1320
SGRKSPMARQ FLTFASSLES NLDEKSKLYK DASLQHVFLM NNIHYMAQKV KGGELRLIFE  1380
DDWIRERHRK FQQHAMSYQR ASWRYILSLL KEEGIQNPGS NSISKSLLQE RLRSFYLAFE  1440
EIYKVQTAWL IPDPQLREDL QISTSLNVIQ AYRTFVGRHS NDISDKFIRY STDDMENYIM  1500
DLFEGSPKLL QNSSRSSSTV KHVWNINWVR TAPTFPPPPV IPDMTPNDLK NGDRNLKTPR  1560
KLSKLFSRRL IK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01080.1	2e-72	WRKY family protein