PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT3G01080.1
Common NameATWRKY58, T4P13.24, WRKY58
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 423aa    MW: 47130.1 Da    PI: 8.2397
Description WRKY DNA-binding protein 58
Gene Model
Gene Model ID Type Source Coding Sequence
AT3G01080.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.3e-32167223259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  dDgynWrKYGqK++kg e+prsYY+Ct+ +Cpvkkkvers+ d+++++i+Y+g+H+he
  AT3G01080.1 167 DDGYNWRKYGQKPIKGCEYPRSYYKCTHVNCPVKKKVERSS-DGQITQIIYKGQHDHE 223
                  8****************************************.***************8 PP
2WRKY105.72.4e-33305363159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct+++C+v+k+ver+++d k+v++tYeg+Hnh+
  AT3G01080.1 305 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTPNCTVRKHVERASTDAKAVITTYEGKHNHD 363
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-28157225IPR003657WRKY domain
SuperFamilySSF1182901.96E-25164225IPR003657WRKY domain
SMARTSM007743.4E-35166224IPR003657WRKY domain
PfamPF031061.3E-24167222IPR003657WRKY domain
PROSITE profilePS5081124.03167225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-36290365IPR003657WRKY domain
SuperFamilySSF1182903.53E-29297365IPR003657WRKY domain
PROSITE profilePS5081137.539300365IPR003657WRKY domain
SMARTSM007741.5E-38305364IPR003657WRKY domain
PfamPF031061.5E-25306363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0031347Biological Processregulation of defense response
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
PO:0009047anatomystem
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MAVEDDVSLI RTTTLVAPTR PTITVPHRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DNFPDVLTPD NQRTTSFTHL LTSPMFFPPQ SSAHTGFIQP RQQSQPQPQR PDTFPHHMPP  120
STSVAVHGRQ SLDVSQVDQR ARNHYNNPGN NNNNRSYNVV NVDKPADDGY NWRKYGQKPI  180
KGCEYPRSYY KCTHVNCPVK KKVERSSDGQ ITQIIYKGQH DHERPQNRRG GGGRDSTEVG  240
GAGQMMESSD DSGYRKDHDD DDDDDEDDED LPASKIRRID GVSTTHRTVT EPKIIVQTKS  300
EVDLLDDGYR WRKYGQKVVK GNPHPRSYYK CTTPNCTVRK HVERASTDAK AVITTYEGKH  360
NHDVPAARNG TAAATAAAVG PSDHHRMRSM SGNNMQQHMS FGNNNNTGQS PVLLRLKEEK  420
ITI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39167366878Probable WRKY transcription factor 4
2lex_A1e-39167366878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible259320_at0.0
Expression AtlasAT3G01080-
AtGenExpressAT3G01080-
ATTED-IIAT3G01080-
Functional Description ? help Back to Top
Source Description
TAIRmember of WRKY Transcription Factor; Group I
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT3G01080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Regulation -- Hormone ? help Back to Top
Source Hormone
AHDsalicylic acid
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT3G01080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4262540.0AF426254.1 Arabidopsis thaliana WRKY transcription factor 58 (WRKY58) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_186757.20.0WRKY DNA-binding protein 58
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLA0A1I9LLS80.0A0A1I9LLS8_ARATH; WRKY DNA-binding protein 58
STRINGAT3G01080.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Representative plantOGRP1417875
Publications ? help Back to Top
  1. Eulgem T,Rushton PJ,Robatzek S,Somssich IE
    The WRKY superfamily of plant transcription factors.
    Trends Plant Sci., 2000. 5(5): p. 199-206
    [PMID:10785665]
  2. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  3. Miao Y,Laun T,Zimmermann P,Zentgraf U
    Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.
    Plant Mol. Biol., 2004. 55(6): p. 853-67
    [PMID:15604721]
  4. Wang D,Amornsiripanitch N,Dong X
    A genomic approach to identify regulatory nodes in the transcriptional network of systemic acquired resistance in plants.
    PLoS Pathog., 2006. 2(11): p. e123
    [PMID:17096590]
  5. Ascencio-Ib
    Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
    Plant Physiol., 2008. 148(1): p. 436-54
    [PMID:18650403]
  6. Hanada K, et al.
    Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.
    Mol. Biol. Evol., 2011. 28(1): p. 377-82
    [PMID:20736450]
  7. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]