PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G02702
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family MYB
Protein Properties Length: 288aa    MW: 32756.5 Da    PI: 6.0898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G02702genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-182168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed ll+++++ +G g+W++ a++ g++Rt+k+c++rw++yl
      Ro04_G02702 21 KGPWTLDEDTLLIHYIANHGEGHWNSLAKCAGLKRTGKSCRLRWLNYL 68
                     79********************************************97 PP
2Myb_DNA-binding52.79.6e-1774117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Ro04_G02702  74 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 117
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MAALANSVCT SPNEEDNELR KGPWTLDEDT LLIHYIANHG EGHWNSLAKC AGLKRTGKSC  60
RLRWLNYLKP DIKRGNLTPQ EQLLILELHS KWGNRWSKIA QHLPGRTDNE IKNYWRTRVQ  120
KQARQLNIES NSKRFLDAVR CFWMPTLLQK MEQTSSRTSS DYLPSQNSVA ATVSPNNNSV  180
PCVSPKVDSH VSDYYSLIGN SSPSHNSLSS DSLISQLPQI PEQPASSSYA FEALNDNYYV  240
DYDMEGFSLD PVSEIASFHT SQFDCQMAEN YWTSGNYMTD TLWNMEGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-89MYB family protein