PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00453

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 593aa MW: 63467.8 Da PI: 8.8023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00453	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	84	106	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Ro04_G00453 84 FVCEVCNKGFQREQNLQLHRRGH 106 89*******************88 PP
2	zf-C2H2	13.1	0.00028	160	182	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Ro04_G00453 160 WKCEKCSKRYAVQSDWKAHSKTC 182 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MAASSSSLFG IREEDQNQMK QQQHSSSTPT SSAAAAPPAP PPQKKKRNQP GTPSNLCCLS 60 FFITDPEAEV IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP 120 KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK 180 TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARHQP SLSSLGSNLY GGTNNTGLAL 240 SHHHHQHQQV VGPQIPDHHH HHNNQSTAAD ILRLGGGGNA RTGHFDHLLS PPPMGSSFRP 300 AQSSASFFIN QDQSNQQYHH DQDKQFHGLM QFSDHDPNNN SSTGGNLFNL PFLSNSSNSA 360 AGGNNSNLLI HPDHQFNSNG GGGGGEGGSN LFSSHMVGGG GDHMSSGNVP TLYSAQVQNT 420 HHGGAGAAVS HMSATALLQK AAQMGSTTSS NNTSASLLRS FGSTSSTKSE RPTSASLVPA 480 NLGGLFGGGS ENENNLQDLM NTFAAGGSSS IFGSGSFGSG FHDAANRDEP KLPAVSIGAG 540 SDRLTRDFLG VGQIVRSMSG GQQQTQIEHM RSLDSESNAV PSTQSFGGGG NFQ

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MAASSSSLFG IREEDQNQMK QQQHSSSTPT SSAAAAPPAP PPQKKKRNQP GTPSNLCCLS  60
FFITDPEAEV IALSPKTLMA TNRFVCEVCN KGFQREQNLQ LHRRGHNLPW KLKQKTTKEP  120
KRKVYLCPEP TCVHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKRYA VQSDWKAHSK  180
TCGTREYRCD CGTLFSRRDS FITHRAFCDA LAQESARHQP SLSSLGSNLY GGTNNTGLAL  240
SHHHHQHQQV VGPQIPDHHH HHNNQSTAAD ILRLGGGGNA RTGHFDHLLS PPPMGSSFRP  300
AQSSASFFIN QDQSNQQYHH DQDKQFHGLM QFSDHDPNNN SSTGGNLFNL PFLSNSSNSA  360
AGGNNSNLLI HPDHQFNSNG GGGGGEGGSN LFSSHMVGGG GDHMSSGNVP TLYSAQVQNT  420
HHGGAGAAVS HMSATALLQK AAQMGSTTSS NNTSASLLRS FGSTSSTKSE RPTSASLVPA  480
NLGGLFGGGS ENENNLQDLM NTFAAGGSSS IFGSGSFGSG FHDAANRDEP KLPAVSIGAG  540
SDRLTRDFLG VGQIVRSMSG GQQQTQIEHM RSLDSESNAV PSTQSFGGGG NFQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-109	C2H2 family protein