PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro04_G00303
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family GRAS
Protein Properties Length: 609aa    MW: 67118.8 Da    PI: 5.3322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro04_G00303genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.52.2e-1372416001374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  lv+ L++cAeav++++l+la+al++++  la +++ +m+++a++f+eALa+r++r    +y    p++  +++ se  + +  f+e++P+lkf+h+ta
  Ro04_G00303 241 LVHGLMACAEAVQQNNLNLAKALVTQIGCLAFSQAGAMRKVATFFAEALAQRIFR----VY----PQSPIDHSYSE--MLQMHFYETCPYLKFAHFTA 328
                  6899***************************************************....44....33332222344..44456*************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaIle ++ ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+e+g++La++Ae+++v+fe++ +va++l+dl+ ++L++
  Ro04_G00303 329 NQAILEGFQDKKRVHVIDFSMNQGMQWPALMQALALRPGGPPAFRLTGIGPPAADNSDHLQEVGWKLAQLAETIHVEFEYRGFVANSLADLDASMLEL 426
                  ************************************************************************************************** PP

         GRAS 197 kp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +p   E++aVn+v++lh+ll++++++e+    vL++vk+++P++v+vveqea+hn++ Fl+rf e+l+yys+lfdsle ++   +++++++++++lg+
  Ro04_G00303 427 RPseVESVAVNSVFELHKLLARPGAIEK----VLSVVKQMKPEIVTVVEQEANHNGPVFLDRFNESLHYYSTLFDSLEGSV---NSQDKMMSEVYLGK 517
                  **88899*********************....************************************************7...899999999***** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +i nvvaceg +r+erhetl++Wr r+++aGF+pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Ro04_G00303 518 QIFNVVACEGVDRVERHETLAQWRTRFDSAGFTPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWK 600
                  **********************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    
MKREHHSHHP PNPSMASAST QKPSKAAIWD DSHRDDGMDE LLAVLGYKVK SSNMADVAQK  60
LEQLEEFMGT VQEDGLSQLA SDTVHYNPSD LSTWLESMIS ELNAPTNFDP VMAAPPPLNQ  120
LTGPGPVVLD DSFLAPAESS TITSIDFADQ NANTKSKSLS PRNQFDDCSS SNYDLKAIPG  180
KAIFSPTQFD SSPREPKRLK PSSDFYSSTT SSSCLQPVSL PTTESTRPVV LVDSQENGVR  240
LVHGLMACAE AVQQNNLNLA KALVTQIGCL AFSQAGAMRK VATFFAEALA QRIFRVYPQS  300
PIDHSYSEML QMHFYETCPY LKFAHFTANQ AILEGFQDKK RVHVIDFSMN QGMQWPALMQ  360
ALALRPGGPP AFRLTGIGPP AADNSDHLQE VGWKLAQLAE TIHVEFEYRG FVANSLADLD  420
ASMLELRPSE VESVAVNSVF ELHKLLARPG AIEKVLSVVK QMKPEIVTVV EQEANHNGPV  480
FLDRFNESLH YYSTLFDSLE GSVNSQDKMM SEVYLGKQIF NVVACEGVDR VERHETLAQW  540
RTRFDSAGFT PVHLGSNAFK QASMLLALFA GGDGYRVEEN DGCLMLGWHT RPLIATSAWK  600
LGSQSVMTH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein