PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro04_G00084

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

TCP

Protein Properties

Length: 420aa MW: 44563.3 Da PI: 7.1587

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro04_G00084	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129	4.8e-40	66	214	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Ro04_G00084 66 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSAPshlrtsgyfn 163 789******************************************************************99986666666666444445556667777 PP TCP 89 ..................................................k 89 Ro04_G00084 164 psssnllfgggaaaasqlmeeqhrsrvlfpgvdlspssmllnfnsgnvnaM 214 777777777777777777777777777777775555555555555555431 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MIMEGDENGI RIRPNFPLQF LDKRKEEEAA SASSSYGGEP GSSKAVVVRS NSDVSIVQEL 60 PKKPAPPKRT STKDRHTKVD GRGRRIRMPA TCAARVFQLT RELGHKSDGE TIEWLLQQAE 120 PAVIAATGTG TIPANFTSLN ISLRSSGSSM SAPSHLRTSG YFNPSSSNLL FGGGAAAASQ 180 LMEEQHRSRV LFPGVDLSPS SMLLNFNSGN VNAMLEAKQE LRDQANNNST TTLDLDHMSR 240 EGTSIGRKRR PDEQDLLSSS SSQTSHSQLG NYMLQSSTGS IPASQSTVPA TFWMVANNPS 300 SNNNQGQGGN MSGGGAHLHH QDPPMWTFPT INGNHGLHFM NFAPPMALLP SQVQLGTSGI 360 STGGGGGGGG TVADSHLGML AALNNAYRPI LGGGAPVNGQ HPSHDADEEH HDDHSNASQR

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MIMEGDENGI RIRPNFPLQF LDKRKEEEAA SASSSYGGEP GSSKAVVVRS NSDVSIVQEL  60
PKKPAPPKRT STKDRHTKVD GRGRRIRMPA TCAARVFQLT RELGHKSDGE TIEWLLQQAE  120
PAVIAATGTG TIPANFTSLN ISLRSSGSSM SAPSHLRTSG YFNPSSSNLL FGGGAAAASQ  180
LMEEQHRSRV LFPGVDLSPS SMLLNFNSGN VNAMLEAKQE LRDQANNNST TTLDLDHMSR  240
EGTSIGRKRR PDEQDLLSSS SSQTSHSQLG NYMLQSSTGS IPASQSTVPA TFWMVANNPS  300
SNNNQGQGGN MSGGGAHLHH QDPPMWTFPT INGNHGLHFM NFAPPMALLP SQVQLGTSGI  360
STGGGGGGGG TVADSHLGML AALNNAYRPI LGGGAPVNGQ HPSHDADEEH HDDHSNASQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47620.1	1e-52	TCP family protein