PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G32653

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Protein Properties

Length: 450aa MW: 50787.1 Da PI: 4.9441

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G32653	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.8	8.4e-18	160	257	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+l++sdv++ gr+v+pkk ae++ +++++++++l+++d s+ +W +k++y ++ks++yv++ +Fv+ n+L++gD + ++ ++++++l+ Ro03_G32653 160 FKKELKKSDVGSWGRIVIPKKEAEKYlpSLDEKQGIELRIRDvHSNHVWGLKYKYwaNNKSRMYVFE-SAGNFVRKNELEVGDCIFLY--EDESKNLY 254 89************************99999*****55569**99888888889999.99***********77777..44777777 PP EEE CS B3 94 vkv 96 +++ Ro03_G32653 255 LSI 257 766 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MENFHQPLFP STTTTMTSIN EPMSSSPSTL ASSSSLCCYY PAFQYLPPNK GGRLLHFPNP 60 YPYYQPKASQ PPFLYPMYPV LLPRPQPNPV SGDQGGIASK AARIERRMAR QRRLFLSRSA 120 ADSGSSSSST QMDISGAGSD MQNKDLYFCM PDKKELRVLF KKELKKSDVG SWGRIVIPKK 180 EAEKYLPSLD EKQGIELRIR DVHSNHVWGL KYKYWANNKS RMYVFESAGN FVRKNELEVG 240 DCIFLYEDES KNLYLSIEKA RTRPTHVAES SYEQQHYATN PNNNNNDNNS SSRNTQITNS 300 DDNNHKSTTT FTNSSNNADM NSETNSNNTT MYTPYTYDEA RSEEDEWSLA ALLEDESNEM 360 VTLSADHALS YGRLEEANNS IDNVINSQLE SSSQPTMAGI WASSSSSQSI VKMVEDHFDD 420 CYKGLGTLPE VDCYEQGVFD SIDMINDDKT

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MENFHQPLFP STTTTMTSIN EPMSSSPSTL ASSSSLCCYY PAFQYLPPNK GGRLLHFPNP  60
YPYYQPKASQ PPFLYPMYPV LLPRPQPNPV SGDQGGIASK AARIERRMAR QRRLFLSRSA  120
ADSGSSSSST QMDISGAGSD MQNKDLYFCM PDKKELRVLF KKELKKSDVG SWGRIVIPKK  180
EAEKYLPSLD EKQGIELRIR DVHSNHVWGL KYKYWANNKS RMYVFESAGN FVRKNELEVG  240
DCIFLYEDES KNLYLSIEKA RTRPTHVAES SYEQQHYATN PNNNNNDNNS SSRNTQITNS  300
DDNNHKSTTT FTNSSNNADM NSETNSNNTT MYTPYTYDEA RSEEDEWSLA ALLEDESNEM  360
VTLSADHALS YGRLEEANNS IDNVINSQLE SSSQPTMAGI WASSSSSQSI VKMVEDHFDD  420
CYKGLGTLPE VDCYEQGVFD SIDMINDDKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28300.1	4e-39	B3 family protein