PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G25830

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

Trihelix

Protein Properties

Length: 473aa MW: 53891.8 Da PI: 6.2824

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G25830	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.5	6.4e-22	143	239	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt++ v++Li ++ ++++ + + +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++++ +++ +++++++ + d++ Ro03_G25830 143 KWTDNVVRLLISVVACVGDDGSVEGgeglkrksavlQKKGKWKTVSKIMIRKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGtSCQVVENPTLMDSM 239 7************777777743223555666788********************************************669999999888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MEEIEGIAFE LGMRIQRLGF CGKMDGSGLG GGFLSGPSGG TLDLESSIPR HQEKQLGHPL 60 LAHHHVNVMS GVGVDHRPVG LVEVKGSIPK GASMDIVKGK AVAPFNHGYN LSEEDEPSYT 120 EDGNGENTEG AKGKKGSTWQ RMKWTDNVVR LLISVVACVG DDGSVEGGEG LKRKSAVLQK 180 KGKWKTVSKI MIRKGCHVSP QQCEDKFNDL NKRYKRLNDI LGRGTSCQVV ENPTLMDSMP 240 HLSAKAKDDV RKILSSKQLF YKEMCAYHNG QWTLDCHDLD LQGHPLPLGR CSTDNHVSDE 300 EEAEEHHDTE DDELFDEDNK GDGIDRERMG GMGERKRSSE EDDHFWPQLI SLDSFEVEMA 360 EIFQDPKKTI WERREWIKKQ KLQLQEQRVS FQAEALELEK QRYKWLRYRS KKDRELERLR 420 LENERMKLEN ERRALLLRQK ELEIDVRRSE ASLEPSLGID RLLGRDLDLG RHQ

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MEEIEGIAFE LGMRIQRLGF CGKMDGSGLG GGFLSGPSGG TLDLESSIPR HQEKQLGHPL  60
LAHHHVNVMS GVGVDHRPVG LVEVKGSIPK GASMDIVKGK AVAPFNHGYN LSEEDEPSYT  120
EDGNGENTEG AKGKKGSTWQ RMKWTDNVVR LLISVVACVG DDGSVEGGEG LKRKSAVLQK  180
KGKWKTVSKI MIRKGCHVSP QQCEDKFNDL NKRYKRLNDI LGRGTSCQVV ENPTLMDSMP  240
HLSAKAKDDV RKILSSKQLF YKEMCAYHNG QWTLDCHDLD LQGHPLPLGR CSTDNHVSDE  300
EEAEEHHDTE DDELFDEDNK GDGIDRERMG GMGERKRSSE EDDHFWPQLI SLDSFEVEMA  360
EIFQDPKKTI WERREWIKKQ KLQLQEQRVS FQAEALELEK QRYKWLRYRS KKDRELERLR  420
LENERMKLEN ERRALLLRQK ELEIDVRRSE ASLEPSLGID RLLGRDLDLG RHQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	7e-67	Trihelix family protein