PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G24413
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family G2-like
Protein Properties Length: 709aa    MW: 77842.7 Da    PI: 6.7026
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G24413genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.21.6e-32108162155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Ro03_G24413 108 KPRLRWTADLHERFVDAVTQLGGAAKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 162
                  79****************************************************8 PP
2Myb_DNA-binding64.52e-20110161148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r+rWT++++e++vdav+qlGg    t+k+I+rtm+ kg+tl ++ks++qky+
      Ro03_G24413 110 RLRWTADLHERFVDAVTQLGGAakaTPKAIMRTMNvKGLTLFHLKSHLQKYR 161
                      89******************99*****************************7 PP
3G2-like94.58.3e-30432482151
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                  k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQ
  Ro03_G24413 432 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ 482
                  79************************************************* PP
4Myb_DNA-binding56.56.4e-18434482145
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwq 45 
                      r+rWT e++e++vdav+qlGg+   t+k + r mg +g+t +++ks++q
      Ro03_G24413 434 RLRWTHELHERFVDAVAQLGGPdraTPKGVLRVMGvQGLTIYHVKSHLQ 482
                      89**********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    
MTNEVGLQRE TREKSAEMDK SPKSVKKREA APSPFISLSR SHHLPNKIFT AARRRVEIGI  60
WRLQTDEMFP RLMQPPPHEG IVGQEDMQGH GNHNHRADPC LVLTSDPKPR LRWTADLHER  120
FVDAVTQLGG AAKATPKAIM RTMNVKGLTL FHLKSHLQKY RLGKQSGKDM DEVSKDASYL  180
LESPGTGNSS PNLPTSDMNE GYEVKEALRV QMEVQSKLHV QVEAEKHLQI RQDAERRYMA  240
MLERACKMLA DQFIGGSVID TDGHKCHGLG NKNPKSSSLD SLGFYSLQSA DVAGVHGLEE  300
EVLTSVHPQR ADCSTESCLT SHESPGGLTL EGSPGGGKKR MLSLESATAS LIWGEAKVRT  360
QEVDPHGITS VFNMYFSAVL SAQGPCNVWQ YGNSGLVQNN LFVHGQYLDC DTNTMDLANG  420
GNSPSNSNLA SKQRLRWTHE LHERFVDAVA QLGGPDRATP KGVLRVMGVQ GLTIYHVKSH  480
LQDPSLWCLD SLQMLMQGGK ADKKESGDML SNVDGSSGMQ ITEALKLQME VQRQLQLRIE  540
AQGKYLKKII EEQQRLGGVL SEAPGPGNST RASGDDCPES DQVDPATPAP TSECPIQDKA  600
IKERAPAKSL SVDESCSSRH EPLTPDSDCH VISPAESPKA ERPMKKQRFN MGEAFSNPEV  660
VLTHQILESS LTSSYQQAHT IFLPREQSNP SSGISGRNVD LEQVAGSDM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-105G2-like family protein