PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G23868

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

HB-other

Protein Properties

Length: 450aa MW: 50653.2 Da PI: 8.5076

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G23868	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.9e-16	2	45	14	57
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +Le+++++++yp++e++++LA+ lgL+e+q++ WF+ rR k+k+ Ro03_G23868 2 ALEKFYNEHKYPTEEMKTQLAEDLGLSEKQISGWFCHRRLKDKR 45 7*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence
MALEKFYNEH KYPTEEMKTQ LAEDLGLSEK QISGWFCHRR LKDKRLSRDE TCANGRQDRS 60 SGVIQDRASG LGQDSCGSTK DYRYVDPREV ESRRLSGHDF PAADITREHR VRYTERVVGM 120 DNTSSESSSS LQDRFSTQND DPYDMETSRY VTDNGVFSPL NSKGTENMGY KPSGYLKVKG 180 EIENAAITAV KRQLGRHYRE DGPPLGVEFD PLPPGAFESP MDPVHANAEP SIGGDAAVLH 240 SPDTSGVKRQ SSPSSRYEVY NSKLSSQYMQ QENPGNMHGV DMAERKSCKQ LRQKSTYLKD 300 TNSSAGLNSS LDIYDKFPGG ISAYNGNRKN RMSSKHGHYG RKITSEPTTP WLNESDKVRI 360 PKIGQRSKAS KSVKYSETHD TERGLFTMIE REEKVDGEFK AMKDSQNPLG VMMTDEMAVA 420 KQGRVNFPQR EYATNLSFSQ IPERKNQIKG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence

MALEKFYNEH KYPTEEMKTQ LAEDLGLSEK QISGWFCHRR LKDKRLSRDE TCANGRQDRS  60
SGVIQDRASG LGQDSCGSTK DYRYVDPREV ESRRLSGHDF PAADITREHR VRYTERVVGM  120
DNTSSESSSS LQDRFSTQND DPYDMETSRY VTDNGVFSPL NSKGTENMGY KPSGYLKVKG  180
EIENAAITAV KRQLGRHYRE DGPPLGVEFD PLPPGAFESP MDPVHANAEP SIGGDAAVLH  240
SPDTSGVKRQ SSPSSRYEVY NSKLSSQYMQ QENPGNMHGV DMAERKSCKQ LRQKSTYLKD  300
TNSSAGLNSS LDIYDKFPGG ISAYNGNRKN RMSSKHGHYG RKITSEPTTP WLNESDKVRI  360
PKIGQRSKAS KSVKYSETHD TERGLFTMIE REEKVDGEFK AMKDSQNPLG VMMTDEMAVA  420
KQGRVNFPQR EYATNLSFSQ IPERKNQIKG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	1e-76	HB-other family protein