PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G03250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 507aa MW: 56823.8 Da PI: 8.9698 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.3 | 2.6e-18 | 21 | 76 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yp++e++ +LA+++gLte+qV+ WF+ rR k+k+ AT4G03250.1 21 KKRKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKR 76 899***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 3 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.84E-17 | 16 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.568 | 17 | 77 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-18 | 19 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-16 | 21 | 77 | No hit | No description |
Pfam | PF00046 | 1.1E-15 | 21 | 76 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 507 aa Download sequence Send to blast |
MHSDSGEATA DGDKASTENS KKRKLKTPMQ VMALENFYNE HKYPTEEMKG KLAEEVGLTE 60 KQVSGWFCHR RLKDKRHVKE DGNAIGSQDR SSVVLQDRGS GLRQDSCGST KQTDYWNPKP 120 REVESQRLYM GNADGEDSTS SDRSSSLRKN LVSSKDGIRD VESSRYVAHK DVIQHPQFMR 180 SYGYNKPSGY LKVKGESENF AITAVKRQLG RQYQEDGPPL GVEFDPLPPG AFEPQTNPIV 240 HEPIYVGNQR RPHLPHLLGT RKSFNPGPSY ELARKSKLHS PDPDSEDDEH DDDDNIMVGM 300 EPGLRDKKSF GEPRLKSPST SFYNSVPRHK SFKETFKGSP REIPVTNSKK GWISSKSWAE 360 GSRNHLVANV QNLSGSNIET NQSHDYDNNI SNGGRKTGYL TKSSKLLPPS RSRSPESMDR 420 GPSSGMAGIY HGERNQMKMQ REKLHSTDEP PVAKRVKHGY IQQVYAPKSS SYSEILERKS 480 QINRSGVELP SSLSGDDETD ESSSSMD |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 334186340 | 0.0 | ||||
Expression Atlas | AT4G03250 | - | ||||
AtGenExpress | AT4G03250 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G03250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Intact With | |||||
BioGRID | AT1G14920 |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G03250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ441296 | 0.0 | AJ441296.1 Arabidopsis thaliana mRNA for homeodomain protein 14 (hd-14 gene). | |||
GenBank | BT026372 | 0.0 | BT026372.1 Arabidopsis thaliana At4g03250 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_192234.2 | 0.0 | Homeodomain-like superfamily protein | ||||
TrEMBL | F4JI72 | 0.0 | F4JI72_ARATH; Homeodomain-like superfamily protein | ||||
STRING | AT4G03250.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12202 | 25 | 31 | Representative plant | OGRP8823 | 8 | 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G03250.1 |
Entrez Gene | 827999 |
iHOP | AT4G03250 |
wikigenes | AT4G03250 |
Publications ? help Back to Top | |||
---|---|---|---|
|