PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ro03_G21181
Organism
Rubus occidentalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus
Family ERF
Protein Properties Length: 236aa    MW: 25242.1 Da    PI: 10.6182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ro03_G21181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-202675255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+taeeAa+a+++a+++++g
  Ro03_G21181 26 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEEAARAYDKAAREYRG 75
                 59*******.**********8...557*************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MAPKAAAKSG SGNQNPKPKP NSLEIRYRGV RKRPWGRYAA EIRDPGKKTR VWLGTFDTAE  60
EAARAYDKAA REYRGVKAKT NFPTPAELHA NNRNNNNNAA RPNPVPARSP SQTSTVDSSS  120
PPPPQPPALD LTLAPRFATS AGYFTAASAY HALPLGRPIF FFDAFARTEN AVTGVHRPAR  180
EMGKVDRSIA AAASTSGGSH SVSDSDSSTV VDFVHSPSKK GPLDLDLNLP PPSENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.13e-25ERF family protein