PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ro03_G20411

Organism

Rubus occidentalis

Taxonomic ID

75079

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rubus

Family

C2H2

Protein Properties

Length: 329aa MW: 37441.6 Da PI: 8.4939

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ro03_G20411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	157	176	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+ksF+r n++ H+ Ro03_G20411 157 FACSICSKSFNRYNNMQMHM 176 78*****************9 PP
2	zf-C2H2	15.9	3.6e-05	241	263	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk+F k + ++H +++ Ro03_G20411 241 FMCRKCGKTFAVKGDWRTHEKNC 263 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MGLWNNQHQV EDHRNLSVQA APPFIEWLKP PSSSFASSSS LTSFCSLEDQ NSSTLQCLPL 60 LSRFTDTKPV KREDLGVQRE GFAVKDEQIE KLTVALHIGL PNSTTEEDEK VVDDVKEEQV 120 LLLPTKKMFN INGDSFNAES RFWIPTPAQI LVGPMQFACS ICSKSFNRYN NMQMHMWGHG 180 SEFRKGPDSL KGTQPAAMLR LPCYCCAQGC KNNINHPRAK PLKDFRTLQT HYKRKHGAKP 240 FMCRKCGKTF AVKGDWRTHE KNCGKLWYCS CGSDFKHKRS LKDHIRSFGK GHSPRPCVHG 300 FHEDDQKECI TASDEADEFS SPINMHYKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-112	C2H2 family protein